Lycium barbarum (goji berry): 132642338
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Entry
132642338 CDS
T09483
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132642338
03036 Chromosome and associated proteins [BR:
lbb03036
]
132642338
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
132642338
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132642338
Chromosome and associated proteins [BR:
lbb03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
132642338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
ResIII
AAA_19
AAA_22
PhoH
UvrD-helicase
DEAD
Helicase_RecD
AAA_16
Mov-10_helical
ATPase_2
Motif
Other DBs
NCBI-GeneID:
132642338
NCBI-ProteinID:
XP_060215556
LinkDB
All DBs
Position
1:complement(146734887..146752536)
Genome browser
AA seq
973 aa
AA seq
DB search
MGTVTDKSDDEYSVISDRGDIGFVDFDKYKSACSYNPNEESDIVVISVPFPLIGGKPKSG
FVGESVVDSITIENTTNESLDLWSIKIYDSKPEDSFTLSLMEPPAACSDVEYVQQFMESF
SLEDRMLRPGQTLTVWLICKPKEIGLHTSAVHFNVGEDNIERLVFVLAEDKVSQSLTSSR
PFHRDRKKKAPAVDAFAVNGYVRGSRPTRASRGFKNRLQSYPIPQDVREMIETKQFPDVI
GQGLRKDNYIAYFRTLLAIEEIKMEEDMRDYDMESVTMKRKGPQFLSLDVPGLAERRPSL
VYGDYIFAKLATTDASPYQGYIHRVEAEEVYLKFEKKFHINHVAGNLYNVQFAFNRIGVR
RLHQAIEATESLNEEVLFPSGIARTRNIQAARLAPISCTLNEEQTSAVEKILGCKGGAPY
VIHGPPGTGKTWTLIEAIVQLHIMRKYARVLVCAPSNSAADHILEKLVSQQNVKVQDREV
LRLNALTRPLDDVNPSYIRFCNVEDDGFKCPLLRDLKRYRIIISTYASSCLLYAEGIQRG
HFSHIFLDEAGQASEPDTMIPLSHLLKEETVVVLAGDPLQLGPIVFSKDAENYGLGMSYM
ERLFECKLYGDLNENYATRLVKNYRCHKVILKLPSEMFYGGQLIPCKEDKISKTWVDLLP
NKEFPLLFIGIQGCDEREGNNPSWFNRIEASKVVEIIRDLIENKGMNEEDIGVITPYRQQ
VLKIRKVLESFDWVDIKVGSVEQFQGQEREVIIISTVRSTIQHNDFDRIHYLGFLSNPRR
FNVAATRARSLLVVIGNPHIICKDPYWNKLLWYCADNGSYKGCFLPEKVEILQEDSGQAN
NWCDGEAQENNWDGEGAQANDWDQDQRGQVNDWDQDQGEQINDGDQDQGGQVNDWDQHQG
AQANDWDQDQGEQANDWDQDEDGQAKNWNDESTYNEEKQNLQPSPEVQWGTVQQTEYIPD
PVVDEAEWSDGWK
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgggcacagttactgataagtcggatgatgaatactcagttattagtgatagaggagac
atcggatttgttgactttgacaaatataaatcagcttgtagctacaatccaaatgaagag
agcgatatagttgttatatctgttccatttccgctgatagggggaaaacctaaatcagga
tttgttggagaaagtgttgtcgattcaatcacaatagagaataccactaatgagtccctg
gacctgtggtcaattaagatctacgactcgaaacctgaggattcattcacgctatctctg
atggaacctccagctgcttgttctgacgtggaatatgttcaacaattcatggagtccttt
agcttagaggatagaatgttacgaccgggccagacactaacagtatggttgatttgtaaa
cccaaagaaattggattgcacacatcagctgtgcacttcaatgtgggtgaggacaacata
gaaagattagtttttgtcttggccgaggataaggtttcccagtccctgacttcgagtagg
ccattccacagagacagaaagaagaaagcaccagcagtagatgcttttgctgttaatgga
tatgttaggggttctcgtcctacaagggcttcacgaggattcaaaaacaggcttcagtca
tatccaattccgcaggatgtaagggaaatgatagagacaaaacaatttcctgatgttatt
gggcaaggtttaagaaaagataattacattgcttacttcagaactttactagcaattgaa
gaaatcaagatggaggaagacatgagggactatgatatggagtctgtcaccatgaagcgt
aagggcccacagtttttgtctcttgatgtcccagggctagctgagaggaggccatcactt
gtttatggggattatatcttcgcaaagctagctacaacagatgctagcccttatcagggt
tatatccaccgagttgaggcggaagaagtatatttgaagtttgagaaaaaattccacatc
aaccatgttgctggaaacctttataatgtgcagttcgcattcaatcgtataggtgtgcgg
aggttacatcaagccattgaagctacagaaagcttaaatgaggaagttctctttccatca
ggcatagccagaacgagaaatatacaagctgctagactggcacctatttcatgtacgctt
aacgaggagcagacgagtgcagttgaaaagattcttgggtgcaaaggaggggctccatat
gttatccatgggcctcctggtacgggcaaaacatggactcttatagaagctatcgtccag
ctacacattatgaggaaatatgctcgagttctggtctgtgcaccttcaaatagtgctgca
gaccatatacttgagaaacttgtcagtcagcagaatgttaaagtgcaggaccgtgaagtt
cttaggttgaatgcactcacacgtcctttagacgatgtgaatcctagttacattcgcttt
tgcaatgtggaagatgatggtttcaagtgtcctcttctcagggaccttaaaagatatagg
attatcatatctacatatgctagttcatgtcttctttatgcagaaggcatacaacgggga
cacttctctcatattttcttggatgaggcaggacaggcatcggagcctgataccatgatt
cctctttctcatcttttaaaggaggagacagtagttgtacttgctggcgacccactgcaa
cttggtccaatagttttctcaaaagatgctgaaaattatggattggggatgtcatatatg
gaaaggttatttgaatgcaagttatatggtgatctcaacgaaaattatgctaccagacta
gtaaagaactaccggtgtcataaagtaattctgaagcttccctcagaaatgttttatgga
ggacagttgatcccatgtaaagaagataaaatttctaagacttgggtggacctgcttcca
aacaaggaatttcctttgcttttcattggtatacaaggttgtgatgaaagggaaggaaac
aacccatcgtggttcaataggatcgaggcgagcaaggttgtagagatcattagagatcta
atagagaacaaaggtatgaatgaggaagatattggggtgataacaccttacagacagcaa
gtactaaaaataagaaaagtccttgagagttttgattgggttgatataaaggttggtagt
gtagagcaattccaaggtcaggaaagagaagttattatcatatcaaccgtccgatcaact
atacaacacaatgactttgatagaatccactacttaggatttttaagcaatccgagaagg
tttaatgttgctgctacaagagccagatcattgcttgtagttatcgggaatccacacatc
atctgcaaggacccctactggaacaagcttttgtggtattgtgcagacaatggctcctac
aagggctgcttcttacctgaaaaagtggagatccttcaagaggattctggacaagcaaat
aattggtgtgatggcgaggcacaagaaaacaactgggacggtgaaggtgcacaagctaat
gattgggaccaagaccaaaggggacaagttaacgattgggaccaagaccaaggggaacaa
attaacgatggtgaccaagaccaagggggacaagttaacgattgggaccagcaccaaggg
gcacaagctaatgattgggaccaagaccaaggggaacaggctaatgattgggaccaagac
gaagatggacaagctaagaattggaatgatgaaagcacttataatgaagagaaacagaat
cttcagccatctcccgaggttcaatggggtacagttcagcaaactgaatacatccctgac
cctgttgtggatgaagctgaatggtctgatggttggaaataa
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