Lycium barbarum (goji berry): 132643610
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Entry
132643610 CDS
T09483
Name
(RefSeq) exosome complex component RRP45A-like
KO
K03678
exosome complex component RRP45
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132643610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132643610
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
132643610
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
G_glu_transpept
Motif
Other DBs
NCBI-GeneID:
132643610
NCBI-ProteinID:
XP_060216060
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All DBs
Position
6:22543887..22554060
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AA seq
444 aa
AA seq
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MEQRMGNTWRMTVNEKKFIESALESELRIDGRRPFDYRTLNIKFAREDGSSEVQLGQTHV
MSFVTSQLVQPYRDRPNEGTLSVFTEFSPMADPSFEVGRPSESAVELGRIIDRGLRESRA
VDTESLCVVAGKWIWSIRIDLHILDNGGNLVDAANIAALAALSTFRRPECTLGGDDGQEV
IVHPPEVREPLPLTIHHLPIAVTFAFIGDENMVIDPTHYEEAVMGGRMSVTLNANGDVCA
IQKAGRQGVMQSVVMQCLRIASVKAGDITSKIKTTVESYNTERALKMVKRHAPPSKAVDV
NEPSQKAKQILEEQKLKSEECSVSQSDDMDVEQGRINKRTDKTLSFTSGPSSWDPYSEGV
NTDELKATLASRGSSAVPMKLDNLGDNTRDETKSDEPLSDVNPVSSSTDSAGKEMAINRE
KTLQDAVKPKNKRKKKKSSNIAAA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaagaatggggaatacatggagaatgacagtaaatgagaagaagtttatagaa
tctgccttagaatctgaactcagaatagatggtaggcgtccctttgattatcgaaccctc
aacatcaagtttgctagagaagatggttcatcagaagttcaactggggcaaactcatgtt
atgagctttgttacatcgcaactagtgcaaccctatcgagatcgaccaaatgaaggaacc
ctttccgtatttactgagttttccccaatggctgatccttcatttgaggtaggtcgtcct
tcagagtctgctgtggagttgggtcgcataattgacagagggttaagggaaagcagagct
gtggacactgaatcactctgtgttgtggctgggaagtggatttggtcaattcgtattgat
ctccatattttggacaatggaggtaatcttgttgatgctgccaatattgctgctttagct
gcactttcgacatttcggaggcctgaatgtacacttggaggagatgacggccaggaagtg
atagtgcatccgccggaggtgagggagccacttcccttgaccatacaccatctacctata
gcagtaacttttgcatttattggagatgagaatatggttatagatccaacacattatgaa
gaagccgttatgggagggagaatgtctgtcaccctgaatgcaaatggtgatgtctgtgca
attcaaaaagctggaagacagggtgtcatgcaaagtgttgtcatgcagtgtcttcgcata
gcatcagtaaaggccggagatataactagcaaaattaaaaccaccgttgaatcttacaac
acagagagagctctcaaaatggtcaagcgacatgctcctcctagtaaagcagttgatgtc
aatgaaccaagtcaaaaggctaagcaaattttggaggagcaaaaattgaaatcagaagag
tgcagtgttagtcagagcgatgacatggatgtcgagcagggtagaatcaacaagagaact
gataagaccctgagtttcacaagcgggccctccagttgggatccatattcagagggtgtc
aacacagatgaattgaaagctactcttgcttctcgtggttcatcagcagtgcctatgaaa
ctagacaatttaggtgataatactagagatgaaacaaaatcagatgaaccactttcagat
gttaatccagtatcttcatcgactgactccgctggaaaagaaatggcaataaacagagag
aagactttgcaagatgctgttaagcctaagaataaacggaaaaagaagaagtcgtctaat
attgctgcagcttag
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