Lycium barbarum (goji berry): 132643699
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Entry
132643699 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132643699
03009 Ribosome biogenesis [BR:
lbb03009
]
132643699
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132643699
Spliceosome [BR:
lbb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132643699
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
90S particles
Helicases
132643699
Pre-60S particles
132643699
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
SNF2-rel_dom
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
132643699
NCBI-ProteinID:
XP_060216204
LinkDB
All DBs
Position
6:31773551..31783752
Genome browser
AA seq
680 aa
AA seq
DB search
MLAAPALVGLPAPARFKFDNSFGNILQYRNIASSTCKRVTKAGYTRVPMDIPGAYQLIDE
ETGDKFIVWGGAEDDDSSIPSKDVLSWSPNNNKPQTHTNQASNGGSAGNFGRLKFRRMRD
LVRKSYTKNKERDVIDHDEQNVRDTSSQSSISSYSEPDQLKEQQTLSVPRGLAKVQQLES
RKNIQKAIRMEDEGYRCDFDAKSARLVDPGSKASASSLRGWGGGGSNHYRPNGEEISRER
RNFDDRNNFFSRKSFQDMGCSDYMIESLKNQHFVRPSHIQSMTFGPIIAGKSCIISDQSG
SGKTLAYLLPLIQRLRQEELQGLSKPSSQSPSVVILAPTAELASQVLNTCRSFSKSGVPF
RSMVVTGGFRQRTQLENLRQELDVLIATPGRFMFLIKEGYLQLTNLKCAVLDEVDILFND
EDFETAFQCLINSSPVTTQYLFVTATLPMDIYNKLVESFPDCELVTGPGMHRTSPGLEEV
LVDCSGDETAEKSPDTAFLNKKNALLQLVESSPVPKTIVFCNKIDSCRKVENALKRFDRK
AYSIKILPFHAALDQESRLANMKEFRSSRKENISLFLVCTDRASRGIDFEGVDHVVLFDY
PRDPSEYVRRVGRTARGAGGKGKAFIFAVGKQVSLARRIMERNRYLLPEQSFSNEDKAKP
GGSSYNIKFSKTSRLLPCLG
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgcaccagcactagtggggctgccagcgccggcacgtttcaagttcgacaac
tcatttgggaatattcttcagtacagaaacattgcaagtagtacttgcaaaagggtgact
aaagctggttacactcgtgtccctatggatatacccggggcataccagctcatagacgaa
gaaactggagacaaattcattgtttggggtggtgctgaagatgatgactcttctatccct
tccaaggatgttctctcttggtctcccaataacaacaaacctcaaactcacaccaatcaa
gcttctaatgggggatcagcagggaactttggcagactgaaattccgaagaatgagagat
ctagtaagaaaaagctacacaaaaaacaaagagcgtgatgttattgatcacgacgaacaa
aatgttagagatacctcttcccaatcatcaatcagttcatatagtgaacctgatcagtta
aaggagcaacaaacgcttagtgttcctcgaggtcttgccaaagttcaacagctagaatcc
agaaaaaatatccaaaaagcaatcagaatggaagatgaaggctatcgctgtgattttgat
gcaaaatctgcaagattagttgatcctggatcaaaagcttctgcttcttccttgcgtgga
tggggcggtgggggatcaaatcattacagacctaatggggaagaaatttctagagaaagg
cgaaactttgatgataggaacaatttctttagtagaaaatcctttcaggatatgggatgc
agtgactatatgattgaatccttaaagaatcagcattttgtgcgcccttcacatattcag
tctatgacatttggacccatcattgctggaaagagctgcataatatctgatcaaagtgga
tctggaaagactttggcttatctactaccacttattcaacgtcttaggcaagaagaactt
caaggacttagcaaaccgtcatctcaaagtcctagcgttgtaattttggcaccaacagct
gaattggcttctcaggttttaaatacatgccgttcattttcaaaatctggtgttccattc
cgttcgatggttgttaccggcggttttcgccagagaactcaactggagaacctaagacag
gagttagacgttcttatagcaactcctggtcggtttatgtttcttatcaaagagggttac
ttgcagttaactaacctcaagtgtgctgtgctggatgaggttgacatcctctttaatgat
gaggattttgagactgcatttcaatgtttaattaattcatcacctgtcaccacacaatat
ttatttgtgactgcaactttgcccatggacatatacaacaagttggtagaaagttttcct
gattgcgaactagtgactggtcctggtatgcaccgtacaagccctggcttggaagaggtc
cttgtagattgcagtggagatgaaacagctgaaaaaagcccggacacagcttttctcaac
aagaagaatgccctacttcagctggtggagagtagcccagttccaaaaacaattgtcttc
tgtaacaagattgatagctgcagaaaagttgagaatgcattaaagcgctttgataggaaa
gcatattccataaaaattttaccgttccatgctgcactagaccaagaaagcagacttgcg
aacatgaaggagtttcgaagctcaaggaaggagaacatttctttgttcttggtgtgcacc
gacagagcatcccgaggtattgactttgaaggtgtagaccatgtagtcctctttgattat
cctcgtgaccctagtgaatatgtacgtcgtgttggaagaactgccaggggtgctggagga
aaaggaaaggcattcatatttgccgttgggaagcaagtttctcttgctcggaggataatg
gaaagaaacagatacctgttacctgaacaatcattttcaaatgaagacaaagcaaaacca
gggggttcatcatataatatcaagttctcaaaaacatccaggttgcttccatgcttgggc
tag
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