Lycium barbarum (goji berry): 132644131
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Entry
132644131 CDS
T09483
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132644131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132644131
Spliceosome [BR:
lbb03041
]
Complex A
U1 snRNP components
U1 related factors
132644131
Complex B
132644131
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
132644131
NCBI-ProteinID:
XP_060216672
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All DBs
Position
6:68942124..68970362
Genome browser
AA seq
1030 aa
AA seq
DB search
MYNIVLHNYIKTPCICSGFPQTHPPTPRGPRVVSEFGHPAMANNSHFTAMQPPIPPLSGP
PQGAIPSMSLQQFQPMLPPQQAQPYVSGSSQQFQPLGHANVAMPPQPSQIPQPMQQVAGR
PVVGGHSMPQGPPIPHDFQRNPPISNNHMPGFGGPSLPLPSSYNQVNADSSRSQYQTQIH
DHRFPSGGQPWMPTSNHNVNSATTIQKTGELAAPLAVLEANQGGDSVETTPSDWIEHTSR
NGKKYYYNRRTRISSWEKPLELMTEMERADASTDWREFTSPEGRKYYYNKVTRKSKWKMP
DEVKLARESMKVEVVKGLGKEKDTISHASDFGSISGVKTSSPGADGSLVLAQRAMSSSVA
VAPVANLLTIVASESSNLPGKVSSPTIDAVEMQNSSEPASPAVANSEKIGIAITLGNSVA
TPVSETTSAQDAVVYGGGVSPDNTEEVKKDAALSEIGNATLSEEKTVELGPLIYESKAEA
KSAFKTLLESANIGSDCTWDQAMRAIINDPRYGALKSLGERKQAFNEYLSQKKKLEAEER
RVKQKKAREDFRIMLEDCKELSPSSRWSKAISIFEHDERFKAVERAKDREDLFEDYVEEL
EKKERARALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIF
QEYLRDLEREEEEQRKLRMEELRKAERKNRDEFRKLMEEHVAAGILNAKTHWRDYCIKIK
DLAAYLAVSSNASGSTAKDLFADVFDELEKQYLDDKSRIRDAVRMTEIGLTSTWTLEDFK
VAIAKYISSPPISDTNLKFVFEELLERAREREEKEAKRHKRLVDEFYELLHASKEITASS
KWEDCKSLFGDRIMGDESLLLEIFDKFVNELKEKAKEKEWKRQEDKARKEKERKDREKKK
EKHRRDKDRGEKSRKERERTKKDGTDSDKAETYSFEEIKRSGSDRDKKHRKRHTSSFDDD
ENEKDHSRSSHRHDSDHKKSKQMDQHVWSSEANSEGQHKKQKRDHRTDSHRDGDYEDHKD
CEFGEDGEVQ
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatagttttgcataactacatcaaaaccccttgcatttgttccgggttcccc
caaacacatccccccaccccgcggggtccgagggttgtttctgaatttggccatcctgcc
atggctaataattctcatttcactgccatgcagcctcctataccgcctctgagtggtcct
cctcagggtgctattccatccatgtcgctgcagcagttccagccgatgcttccaccccag
caggcacaaccatatgtttccgggtcatctcaacaatttcagccacttggacatgcaaat
gttgcgatgcctcctcaaccttcacaaattcctcaacctatgcaacaggttgctggtaga
cctgtagtaggagggcatagtatgcctcagggaccacctattccccatgattttcagcga
aaccctccgatatcaaataaccacatgcctggttttggtggcccaagtttgcctctacct
tcttcatataatcaggtaaatgcagattcttccagatcccagtatcagacacagatacat
gatcataggtttccatcaggggggcaaccctggatgccaacaagtaatcataatgtgaat
tctgcgacaactatacagaagactggagaattagcagctcccttggctgttctagaagca
aatcaggggggtgactctgttgagactaccccgtcagattggattgagcatacttctcga
aatgggaaaaaatactattataatagaaggacaagaatctctagctgggagaagcctcta
gagctgatgacagaaatggagagggcagatgcatcaactgactggagagaatttacaagt
cctgagggaagaaagtattactacaacaaggttactagaaagtcaaaatggaaaatgcct
gatgaagtcaagttggctcgtgagagtatgaaagtggaggtagtcaagggattgggaaaa
gaaaaggacactatttcacacgcctctgattttggatccatttctggtgttaaaacatca
tccccgggtgcagatggttcattagtcttggcacaaagagctatgtcaagctcagtagct
gtggcaccagttgctaacttactaactattgtggcttcagaatcatcaaatttacctggt
aaggtttcttctccgacgattgacgcagtcgaaatgcagaattcttcagaacctgcttcg
ccagctgttgctaattcagagaaaattggaatagcaataaccttgggaaattctgtcgca
acgccagtttctgagactacttcagctcaggatgcagtagtgtatggcggtggagtttct
ccggacaatacggaggaagttaagaaagatgctgcactatctgaaataggaaatgctact
ctttcagaagagaaaacagtcgagctgggaccattaatttatgagagcaaagcggaggca
aagagtgcattcaagactcttctggaatctgcaaatattgggtctgactgcacgtgggat
caggccatgagagcaataatcaatgacccaagatatggtgctctaaaatcccttggtgag
cggaagcaagcttttaatgagtatctgagccaaaagaaaaaactggaagctgaagagaga
cgtgttaaacagaaaaaagctcgtgaagatttcaggataatgttagaagattgcaaggag
ctgtcgccatcctcaagatggagtaaggcaatctccatattcgaacatgatgaacgtttt
aaagctgttgagcgagctaaagaccgtgaggacctttttgaagattatgtggaggaactt
gagaaaaaggagcgtgcaagggcattggaggagcagaagcgcaatagagtggagtattta
gaattcttaaaatcctgtgactttattaaggccagtagccagtggcggaaagttcaggac
cgcttagaagctgatgaaagatgctctcgccttgagaaaattgatcgcttggagattttc
caggaatatttacgtgatttagagagggaagaggaggagcaaaggaaactgcggatggaa
gaattgaggaaagcagaacgtaaaaatcgtgatgagttccgaaaactgatggaagagcat
gttgctgcgggaatacttaatgcaaaaactcactggcgtgattattgcatcaaaatcaaa
gatttagctgcatatctggctgtctcatcaaatgcttcagggtcaacagcaaaagactta
tttgcagacgtttttgatgagctggagaaacagtatcttgatgacaagtcacgaattaga
gatgcagtgaggatgaccgagattggattgacatcaacctggacgcttgaagattttaaa
gttgcaattgcaaagtacattagctctccaccaatatcagataccaacttaaagtttgtc
tttgaagagttactagaaagggccagggagagagaagaaaaagaagctaaaaggcataaa
cgtctagtagatgagttctatgaacttcttcatgcatcaaaggaaattactgcatcgtcg
aaatgggaggactgcaaatccctcttcggagatagaataatgggtgatgagagcttgctg
ctggaaatatttgacaagtttgttaatgaactaaaagaaaaggcaaaagagaaggagtgg
aagcgtcaagaggataaggcaagaaaagagaaggaaaggaaagatagagaaaagaagaag
gaaaagcataggagggataaagacagaggggaaaaaagcaggaaagagagagaaagaacc
aagaaagatggtacagacagcgacaaggctgagacatacagtttcgaggagatcaaaagg
tcaggaagtgacagagataagaaacaccgcaagcggcatacaagttcctttgatgacgat
gaaaatgagaaagatcattcaagaagttctcacagacatgacagtgatcataagaaatca
aaacagatggaccagcacgtctggagttcggaagctaattcggagggccagcataagaaa
caaaagcgagatcatcggactgattctcatagggatggtgactatgaggatcacaaagat
tgtgaatttggtgaggatggagaagttcagtag
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