Lycium barbarum (goji berry): 132644163
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Entry
132644163 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132644163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132644163
03009 Ribosome biogenesis [BR:
lbb03009
]
132644163
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132644163
Spliceosome [BR:
lbb03041
]
Complex A
U1 snRNP components
U1 related factors
132644163
Complex B
132644163
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Helicases
132644163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CREG_beta-barrel
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132644163
NCBI-ProteinID:
XP_060216725
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All DBs
Position
6:70904361..70921900
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AA seq
539 aa
AA seq
DB search
MSYVPPHLRNSTVNSNGGDHLSSKQLEKANSARRSSSVNYSLPKSVAIPDPVFPHWKPSE
RVLRLKSEQIEEIRLRLNVDVNVAPGSCPPPSPIESFPDMCLHASIVKDIEKHGYTAPTS
IQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQQPLQRGDGPLALVLAPTREL
AQQIEKEVTAFSMSLDSFKTAIVVGGTNISEQRSELRAGVHIVVATPGRLIDHLQQGNTS
LCRIGFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPAEIEALAQDYLTNPV
RIKVGKVSSPTANVSQNLEKVPENDKIDQLLDLLVEEAAQAERSGHPFPLTIVFVERKTK
CDEVAEALTQQGLLATALHGGRSQNEREAALRDFRHGPIDILVATDVASRGLDVTGVAHV
INLDLPKTMEDYVHRIGRTGRAGSTGRATSFYTDRDMYLVAQIRRAIADIGSGNDVTIAM
GKTARRKEREAAAAQKEAGSELSKLSLVGSTVNVEDKYRHMIAPAMIKKEGAADDAWDD
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctcctcacctgagaaacagcactgtaaacagtaacggcggcgatcac
ttgtcgtccaaacaattggaaaaggcgaattcagctcgacggagctcctccgtcaattac
tcattgcccaagagtgtcgccatccctgaccctgtcttcccccactggaagccttccgaa
cgtgttcttcgtcttaaatccgagcagatagaagagattcgactgaggcttaacgttgat
gtcaatgtggctccaggctcatgtcctccaccttcacctattgaatcatttcctgatatg
tgcttgcatgcaagcatcgtgaaggatattgaaaagcatggctacactgcaccaacctct
attcaggctcaagccatgcctgttgctcttagcggcagggatctcttgggttgtgcagaa
accggtagcggcaagaccgctgcattcagcatacctatgatacagcactgcctggctcaa
caacctcttcaacgtggtgatggacctttggcattagtgttggcacctacgagggagctt
gcacaacaaatagagaaagaggttacggctttcagcatgtctctggattcctttaagacc
gcaattgttgtaggtgggacaaacattagtgagcagagatctgagcttcgagcaggagta
catatagtggttgctactccgggaagacttatagatcatttacagcaaggaaatacttcc
ctctgtaggatcggttttgttgttttggatgaggctgatagaatgcttgacatggggttt
gaacctcagataagagaggtgatgcgaaatcttccagaaaagcatcaaacactgctcttc
agtgccaccatgccagcagaaattgaagcactggcacaggattacttgactaatcctgtt
cgaataaaagttggaaaagtaagcagcccgactgcaaatgtttcccagaatttagagaag
gtacccgaaaacgataagattgaccaacttttggatttgctggttgaggaggctgctcaa
gctgaaagatctggtcatcccttccctttgaccattgtatttgtggaacggaagacaaag
tgtgatgaagtagcagaagctttaacacagcagggtttgcttgcaaccgcacttcatggt
ggtcgtagccaaaatgaaagagaggctgcccttcgtgatttcagacatggacctatcgat
atcttggttgctactgatgttgcgtcgaggggattggatgtcacaggagttgcacatgta
attaacctagatcttcccaagaccatggaagactatgtacaccggattggaaggactggt
cgtgcaggatcaacgggccgagctacttcattttacactgatcgtgatatgtatcttgtg
gcacaaataagaagagcgatcgctgatattggttctggcaatgatgtgaccattgctatg
ggaaagactgcaagaagaaaggagagagaagctgcagctgcgcaaaaagaagcggggagt
gaattgtctaaactctctttagtagggtccacggtaaatgtggaggataagtataggcac
atgattgccccagcaatgatcaaaaaggagggagccgcagatgatgcttgggatgactga
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