Lycium barbarum (goji berry): 132644378
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Entry
132644378 CDS
T09483
Name
(RefSeq) uncharacterized protein LOC132644378 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132644378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132644378
03400 DNA repair and recombination proteins [BR:
lbb03400
]
132644378
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
132644378
Messenger RNA biogenesis [BR:
lbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
132644378
DNA repair and recombination proteins [BR:
lbb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
132644378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132644378
NCBI-ProteinID:
XP_060216949
LinkDB
All DBs
Position
6:81996044..82025843
Genome browser
AA seq
904 aa
AA seq
DB search
MHSTLKKYFGYTEFRPYQKEIIDKILHGKDCLVIMATGSGKSLCYQVPPLISDKTAVVIS
PLISLMQDQVMALKQRGIEADYISSAQTDRGVQSNAELGHYHILYMTPEKACALPNSFWS
GLLKAGICLLAVDEAHCISEWGHDFRVEYKQLNKLRNVLLNVPFVGLTATATEKVRSDIM
NSLQMKDPHVAIGSFDRKNLFYGVKSFRRSSQFVDQLVEEISKYVDNANSTIIYCTTVKD
TEEIFKSLLEAGIKGGIYHGQMANKAREEAHRSFIRDEFYVMVATVAFGMGIDKPNIRYV
IHYGCPKSLESYYQESGRCGRDGVPSVCWLYYARSDFAKADFYSAEARSAVQRKAILEAF
SAAQHYCMLSTCRRKYLLDYFADEYAYGDCGNCDICTSSMKENDLSREAFLLMACIQSCG
GCWGLNLPIGILRGSRIKKIVDAQFDKLPFHGLGKELSANWWKGLAYQLISRDYLVENFR
DMYKTVSVSEKGLNFLRSSSPDHQPPLFLPETPEMDLDEKNRDAPSEASEIDGLASKEFE
EVSQAEAQLYKMLIEERIKLARATGTAPYAVCGDQTLKRISLTRPSTKARLANIDGVNQH
FVKLYGDNFLQSVKRLSEACNLSLDGNPSSQTSFPSKIVTVPSNKKLTPAKFEAWKMWHE
DGLTFKQIANFPGRAAAIKEQTVLEYILEAAREGCKMNWTRFCEETGLTRETFLSIQNAV
SKVGREKLKPIKNELPEEVSYGQIKAYLTMQEVGVSAEVFSSNSEQSRNGDECFSGISEI
QQNSFIPSDVQGDDDVVEAPVVAGINSASSPGKTEGAEYHLVTGDLLIPTKRQRVEAPEV
ESCRTLDATEESILSWLKNFDDGVTLSDLLEHFNGSTEKSIVHLLCCLEGEFLIYRKNNL
YKLM
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgcactctactcttaagaaatattttgggtacacagagtttcgaccctatcaaaaggaa
atcatagacaagattttacatggaaaagactgtttggtcataatggccactggtagtggc
aaatcattgtgctatcaggttcccccactgatatccgacaagactgctgtagttataagt
cctctcatttctttgatgcaagatcaggtgatggcactgaaacagaggggaattgaagct
gactatatttcaagtgctcagactgatcgtggggtgcagtcgaatgctgagttgggtcac
tatcatattctgtatatgactccagaaaaggcttgtgcgcttcctaacagtttctggtca
ggattgttgaaagcagggatttgtctcttggctgttgatgaagcacactgcatttcagaa
tggggtcatgatttcagggttgagtataaacagttgaacaagctgcgcaatgttctattg
aatgttccatttgttggcttaacagcaactgctacagaaaaagttcggagtgacattatg
aactcgttgcagatgaaagatcctcatgttgctattggctcatttgatcgcaaaaatctt
ttctacggagtcaaatcttttaggcgtagttctcaatttgttgatcagctggtggaggag
atctctaaatatgtagataatgcaaattcaacaataatatattgtacaactgtcaaagac
actgaagagatcttcaaatcacttcttgaggcaggaatcaaaggtggaatctaccatggt
caaatggctaataaagcacgtgaggaggctcataggtcgtttatcagagatgaattctat
gtcatggttgcaactgttgcttttggcatgggtatagataaaccaaacataaggtatgtg
atacactacggctgcccaaagagcctggagtcttactaccaggaaagtggacgatgcggc
agagatggtgttccttctgtttgctggctttactacgcaagaagtgacttcgcaaaagct
gatttctactctgcagaagctcgttcagcagttcaaagaaaagctattctggaagcattt
tctgctgcacaacattactgcatgctgtcaacctgtagaagaaaatatttgttggattac
tttgcggatgagtatgcctatggtgattgtggaaactgtgatatttgcactagctcaatg
aaggaaaacgacttgtccagagaagcatttcttcttatggcttgtattcagtcatgtgga
ggatgttggggcttgaatctacccataggcattcttcgtggatctagaatcaagaaaatt
gttgatgctcagtttgacaagcttccatttcatggtcttgggaaggagttatctgcaaat
tggtggaagggactggcttaccaattgatttcacgtgattatttggtagagaacttcaga
gatatgtacaaaactgtgagtgtcagtgaaaaaggattgaattttctgagatccagtagc
cctgatcatcaacctccactgtttttaccggagactcctgaaatggatcttgacgagaaa
aatagagatgcacccagtgaagcgagtgagatcgatggtttggcttctaaggaatttgaa
gaagtttcacaagctgaagctcaactgtacaaaatgcttatagaagagagaattaagctt
gccagagctactggaactgctccatatgcagtttgtggcgaccaaacattgaaaaggata
agcttgaccaggccttctacaaaagccagactagcaaatattgatggtgtaaaccagcat
ttcgtaaaactgtatggggataattttcttcaaagcgttaagcgtctatcagaagcttgc
aatctttctttggatgggaatccaagcagtcaaacctcttttcccagtaagattgtcact
gttccaagcaataaaaaattaacaccagcaaaatttgaagcatggaagatgtggcatgag
gatggtcttacgttcaaacaaattgctaattttcctggcagagcagcagcaataaaggaa
caaactgtgctagagtatatactcgaagctgcacgggagggttgcaaaatgaattggacc
aggttttgtgaggagactgggctgacaagagagacattcctgagtatccagaatgctgtc
tcaaaagttggtagagaaaaattgaagcctataaaaaatgagttaccagaagaggtaagt
tatggccagataaaggcgtacttgacgatgcaagaggtaggagtatcagctgaagtattt
tcatccaattctgagcaaagtcgcaatggagatgaatgttttagtggaatatcagaaata
caacagaactcttttattccatctgacgtgcaaggagatgatgacgtagttgaggcacct
gttgtcgctggtataaatagtgcttcttctcctggaaagaccgaaggagcagaatatcat
ctcgtgactggtgatttgctcattcctacaaaacgccagagggtcgaagcaccagaagta
gaaagttgtaggactctggatgccacagaagaatccatattgagctggctcaagaacttt
gatgatggggtcaccctttctgatcttttggagcacttcaatgggtccaccgagaaatct
atagtccatctgctttgttgtcttgaaggcgagtttttgatatataggaagaacaatcta
tacaagcttatgtaa
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