Lycium barbarum (goji berry): 132644573
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Entry
132644573 CDS
T09483
Name
(RefSeq) uncharacterized protein LOC132644573
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132644573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132644573
03041 Spliceosome [BR:
lbb03041
]
132644573
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132644573
Spliceosome [BR:
lbb03041
]
Complex B
Other components
Prp19-related factors
132644573
Complex C
132644573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21_C
NRDE-2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
132644573
NCBI-ProteinID:
XP_060217147
LinkDB
All DBs
Position
6:86523676..86532479
Genome browser
AA seq
913 aa
AA seq
DB search
MSIPKELYPSQDDLLYEEELLRNPFSLKLWWRYLVARADSPFRKRAVIYERALKALPGSY
KLWHAYLRERLELVRNLPINHSQYQTLNNTFERALVTMHKMPRIWIMYLVSLTEQRLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPNHIEDLLEFL
LNSELWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGVTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSDSEVQDEGSNSEVGVEEDVDEEDDRLNVAKLEKKLREFWLNDDKDVDLRLSR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGK
PHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGAL
ELMRRATAEPTVEVKRRVAADGNEPVQIKLHKSLRLWLLYVDLEESLGNLESTRAVYERI
LDLRIATPQIIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEEAPADAVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPANEKLS
MYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRARALYK
HSSQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKD
QLQTLEEAKDVLKKAGVADDEMAALERQLVPPENDTKKEQSRVVGFVSAGVVESNGQKVT
ANNEDIDLPEEIDSEEDEKIEIAQKDVPDAVFGGLIRKRDEGNEAEDDSAAKNNDSDGPL
GALERIKRRRQGS
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcccaaaggagctctaccccagccaagatgacctattgtacgaagaagagcta
ctcagaaatcccttcagccttaagctatggtggcgctatttagtagcacgagcagattcg
ccattcagaaaacgagcagtgatttacgaacgagctttaaaagcacttccgggtagctac
aaattatggcacgcttatctccgtgaacgcttagaattagttcgtaaccttccaatcaat
cactcacagtaccaaactctaaacaacacttttgagagagcacttgttacaatgcacaaa
atgccacgtatttggataatgtatttggtgagtttaactgagcagaggcttgttacgcga
acacgaaggacgtttgatagagcgttatgtgcattgcctgttactcagcatgataggatt
tgggaaccttatttggtttttgttagtcaaaggggaattcctattgagacgtcgcttagg
gtttataggaggtacttgaagtatgatcctaatcatattgaggatttgcttgagtttttg
ttgaattccgagttgtggcaggaggccgccgagaggttagctggtgtgttgaatgatgat
aggttttattctattaaagggaagactaaacataggctttggttggagttgtgtgatttg
ttaacgcagcatgctactgagatatcgggtttgaatgtggatgcgataattagaggaggg
attaagaagtttaccgatgaggttgggaggctttggacgtcgttggcggattattatatt
aggaggaagttggttgagaaggcgagggatatttttgaagaaggggtgacgactgtggtg
actgttagggattttagtgttatatttgatgcgtactcgcagtttgaggagagtatgctt
gctttgaaaatggaggagatgagtgatagtgaggtgcaggatgaagggagtaacagtgag
gttggggtggaggaagatgtggatgaagaggatgataggttgaatgtggcaaaattggag
aagaaacttagagagttttggttaaatgatgataaggatgttgacttgagattatctagg
ctagaacatcttatggataggaggccagagctcgcgaatagtgtccttttgaggcaaaat
ccgcataacgtagaacagtggcatagaagggtaaaacttttcgaagggaatccgacaaag
caaatattaacatacaccgaggcagttagaactattgacccaatgaaggctgtagggaag
ccacatactttgtgggttgcatttgcaaaactttatgaaaaccataaggatattgcaaat
gcaagagtcatctttgataaggcagtgcaggtgaactataaaactgtggatcatctggct
agtgtttggtgtgaatgggccgagatggaactacggcacaggaatttcaagggtgctctg
gaactgatgagacgtgccactgctgaaccaactgtcgaggtcaaacggagagttgctgct
gatggaaatgaaccagtgcaaattaagctacacaaatctttaaggttatggttattgtat
gtggatttggaggagagcctaggaaacttagagtcaactcgtgcagtctatgagaggatt
ttggatctgcgaattgctacaccacagattataataaattatgcagtacttctggaggat
cacaagtactttgaggatgcattcaaggtttacgagaggggtgtgaagatcttcaagtac
cctcatgtaaaggatatatgggttacctatctctccaaatttgtgaagagatatgggaag
tcaaagctggaacgagctcgagagttatttgagcatgctgtagaagaggctcctgctgat
gctgtgaagccattgtatcttcagtatgctaaattagaggaagactatggtcttgcgaag
cgggctatgagggtttacgatcaagctacaaaagctgtcccagcaaatgaaaaattgagc
atgtacgagatctacatagctcgtgccgctgagatatttggtgttccaagaacaagggag
atatacgaacaagcaattgagtctgggcttccagataaggatgtgaaagttatgtgctta
aagtatgctgaacttgagaagagcctaggagaaattgatcgtgcccgtgcactatacaag
cactcatcacaattcgcagaccctagatctgaccctgatttctggaacaagtggcatgag
tttgaggtgcagcatggaaacgaggataccttccgcgagatgctccgtgtgaagaggagt
gtatctgcaagctacagccagacacattttatcctacccgagtatctcatgcaaaaggat
cagctgcagacacttgaggaagcaaaggatgtcttgaaaaaagctggtgttgctgatgat
gagatggcagctcttgagaggcagttagtgcctcctgaaaatgatacaaagaaagaacag
agcagggtagttggatttgtaagtgcaggagtagttgagtcgaatggacagaaagtcaca
gcaaacaatgaggatattgatctacccgaggaaattgattccgaagaggatgagaagatt
gaaatagcacagaaggacgtccctgatgcagtgtttggaggtctaatccgtaagagggac
gaaggcaatgaagcagaggacgactctgctgccaagaataatgatagtgatggccctctt
ggcgctctagaaagaataaaacggaggagacaaggctcttag
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