Lycium barbarum (goji berry): 132644918
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Entry
132644918 CDS
T09483
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132644918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132644918
03009 Ribosome biogenesis [BR:
lbb03009
]
132644918
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132644918
Spliceosome [BR:
lbb03041
]
Complex A
U2 snRNP components
U2 related factors
132644918
Complex B
132644918
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
132644918
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
90S particles
Helicases
132644918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
AAA_30
SRP54
T2SSE
PhoH
AAA_7
FtsK_SpoIIIE
DLIC
TsaE
AAA_29
AAA_16
Motif
Other DBs
NCBI-GeneID:
132644918
NCBI-ProteinID:
XP_060217567
LinkDB
All DBs
Position
6:complement(96661155..96666381)
Genome browser
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVVDDASPAKKLNGGSLINGGNSMINKWNGKPYSQRFYDILEKRKTLP
VWHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETAGKGRKYMIGCTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCTSARTVLKYLTDGMLLREAMADPLLERYK
VIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGR
LHPVEIFYTQDPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKITKEIGNL
GDQVGPVKPVPLYSTLPPAMQQKIFEPAPPPVVEGGPPGRKIVVSTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNM
TRLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKN
RFGHIDGDHLTLLNVYHAYKQNQEDPQWCYENFINQRALKSADNVRQQLARIMARFNLKL
CSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDESK
SKR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagaggaaggtgagtttgtttgatgtggtggatgacgcgtcaccg
gcgaagaaactgaatggaggaagcttaattaacggtggaaacagcatgattaacaagtgg
aatggaaagccttactcacagagattttatgatattttggagaagaggaagactcttcct
gtatggcatcaaaaagaggagtttttacaggctttgaaatctaatcaaactctcatcttg
gttggtgaaactggtagtggtaaaaccactcagattccgcagtttgttttggatgctgtt
gaagtagaaacagctggtaagggcaggaagtatatgattggttgcactcaacctcggagg
gtggctgctatgtccgtgtctcgtcgagttgctgaagagatggatgttacaattggggaa
gaagttggatatagcattcgttttgaggactgcactagtgctagaactgttttaaaatac
ttaacagatggtatgcttttaagagaagcaatggcagatcctctattggaacgctacaaa
gtaattattcttgatgaagctcatgaaaggactttggcaacagatgtcctgtttgggctt
ctgaaggaggtgttgaaaaatagaccggacctaaagctagttgttatgagtgccacactt
gaggcagagaagtttcagggctacttctttggtgcacctctcatgaaagttcctggaagg
ctccatccagtggaaatcttttacactcaggatcctgagagagactatctcgaggctgct
attcggactgtggtgcagatacacacgtgtgaacctcccggtgacattcttgttttcctt
accggagaagaggagattgaagatgcctgtcgcaaaatcactaaggagattggtaatttg
ggtgatcaagtaggcccagttaaaccggtgcctctttattcgacacttcccccagctatg
cagcaaaagatatttgaaccagccccaccaccggtggtggagggtggtcctcctggcagg
aagattgttgtgtcaaccaacattgcagagacatctttgacaatagatggcattgtttat
gtcatagatccgggatttgctaagcaaaaggtttataacccgagggtacgtgttgaatct
ttgttggtgtctcctatttcaaaggccagtgcacaccagagatccggacgtgctggaaga
acacagccaggaaaatgctttagactttacaccgagaaaagcttccataatgatcttcaa
ccacagacctatccagaaatacttcggtcaaatttggctaatacagttctaactttgaag
aagctaggtattgatgacctggttcattttgattttatggatcctcctgccccggagacg
ttgatgagagcactagaggttttaaattacttgggagcattggatgatgagggaaacatg
accaggttgggtgagataatgagtgaatttcctcttgatcctcagatggggaaaatgctt
gtcgtaagcccagaattcaactgctccaatgaaatcctctcaatatctgccatgctatca
gtacccaattgctttgtccggcctagggaggctcaaaaagctgcggatgaagcaaagaat
cggttcggtcacatcgatggagatcatttgacgttgctgaacgtgtatcatgcctacaag
caaaaccaggaggaccctcaatggtgttatgagaatttcatcaatcagagggctctcaaa
tcagctgacaatgtgaggcaacagcttgctcgcataatggccaggttcaacctcaagtta
tgcagcacagacttcaacagtcgcgactactatgtgaacataagaaaggctatgttagct
gggtatttcatgcaggttgcccacctggaacgtactgggcattatctaaccgttaaagac
aatcaagtggtacacttgcatccttcaaattgcctggatcacaagccagaatgggttata
tataatgaatatgtcttaacaagcaggaatttcatccgcactgtgactgatatccgtggt
gaatggttggttgatattgcaccacactactatgaccttgcaaactttccgcaatgcgag
gcgaaacgagtgcttgagcggttatacaagaagcgggagcgagaaaaagatgaaagcaag
agcaaaagatga
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integrated database retrieval system
