Lycium barbarum (goji berry): 132644925
Help
Entry
132644925 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132644925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132644925
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132644925
Spliceosome [BR:
lbb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132644925
Complex B
132644925
Complex C
U2 SnRNP specific factors
132644925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132644925
NCBI-ProteinID:
XP_060217575
LinkDB
All DBs
Position
6:complement(96931181..96937908)
Genome browser
AA seq
773 aa
AA seq
DB search
MSKRKFGFEGFGINKQTTYNFERNEAPQRLYVPPSSRAGGSSHDNYEDADVDNIDYDEHD
AVATNNNNDGGAEDDEIDPLDAFMEGIHEEMKAAPPPKPKEKLDKYKDDVDDDPMESFLR
AKKDVGLQLAADALQAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIVVDKKKIEPIPALEH
SEIDYEPFNKDFYEEKPSISGMSDVEVNEYRTSLAIRVSGFDVPRPIKTFEDSGFSVELM
KAISKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQRELQKEE
GPIGVICAPTRELAHQIFVEAKKFSKSHGIRVSAVYGGMSKLDQYKELKAGCEIVVATPG
RLIDMIRKKAFTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV
EKLAREILTDPVRVNVGEIGMANEDITQIVEVIPSDAEKLPWLLEKLPGLIDNGDVLVFA
SKKATVDEIESQLAQKGFRVAALHGDKDQVSRMETLQKFKSGIYHVLIATDVAARGLDIK
SLKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELANSLVAAGQNV
SVELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGSNRGVRGVDFGLGIGYNPESNNPPQS
AAPSRSAAVNSLRTGMMTQFKNSFVAASSNSKNQGMINTAATNPNKRMVLQGFVSGGTIG
GDTNTSRTSSTFTAATSGAYTSSQPARDGGNQKSSESSKEKSRERRRPSGWDR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgaaggtttcggcataaataagcaaacaacgtacaac
ttcgagcgaaacgaagctcctcaacgactatacgtcccaccttcctcacgcgccgggggt
agtagccacgacaattacgaagacgccgacgtagataacatcgactacgatgaacacgat
gctgtcgcaacaaacaacaataatgatggcggcgctgaagatgatgagattgatccactt
gatgcctttatggaagggattcatgaagaaatgaaggctgcgccgccgccaaagccgaaa
gagaaactggataagtataaggatgatgtagatgatgatccgatggagagttttttgaga
gcaaagaaggatgtagggttacaattggctgctgatgctcttcaggctggttataattcg
gatgaggaggtatatgctgcagcaaaggctgttgatgcaggattagttgagtatgattcc
gacgataatcctattgttgttgataaaaagaagattgagcctattcctgctctggagcat
agtgagattgactatgagcccttcaacaaggatttttatgaggaaaagccttctatttca
ggtatgagcgatgtggaagttaatgaatataggacaagcttggcgattcgtgtatccggc
tttgatgttccaaggccaattaagacatttgaagactccggtttttctgttgagttgatg
aaagctatcagtaaacagggatatgaaaagcctacaccaatacagtgtcaagcattacca
attgtgctctctgggagagatattattggtattgctaaaactgggtccggtaagactgct
gcttttgtgctccctatgatagtccacatcatggatcagcgtgaacttcagaaagaagaa
ggtccaattggagttatttgtgcacccactagggaattagcacatcaaatatttgtggag
gcaaagaaattctcgaaatcgcatggaatccgtgtgtctgcagtttatggaggaatgtct
aaattggatcaatacaaagaactaaaggcagggtgtgagattgttgttgctactccaggg
aggttgatagatatgatcagaaagaaggcatttacaatgttgagagcaacttacctagta
cttgatgaggctgatcggatgtttgaccttggttttgaacctcagataaggtccattgtt
ggtcaaattagacctgatcgccaaacattgctcttttcagcaactatgccccgcaaagtt
gaaaagcttgccagagaaatattgacggatcctgtaagagttaatgtgggtgagattggc
atggctaatgaggatattacacaaatagttgaagtgattccttcggatgctgaaaaattg
ccttggcttctggaaaagctcccaggacttattgacaatggtgatgttcttgtctttgct
tcgaaaaaggcaacagtggatgagatagaatcccaattggctcagaagggatttagagtt
gcagctctccatggtgacaaggatcaagtttctcgtatggagacactgcaaaaatttaaa
tctggcatatatcatgttcttatcgcaactgatgttgctgctcgtggtcttgacatcaaa
tcacttaagtcggtggtgaactatgacatagctaaagatatggatatgcatgtccacaga
attgggagaacaggtcgtgctggtgacaaagatggaactgcctacactcttattactcat
aaggaagcgcgttttgctggtgaactggcgaacagtttggttgctgctggtcaaaatgtg
tccgtggaactaatggaccttgctatgaaggacgggaggttccggtccaaaagggatgca
aggaaaggaggcggaaaaagggccaaaggaaggggaggaggaagcaatagaggtgtacga
ggtgtggattttggtctaggtattggatacaatcccgaatcaaataaccctccccagagc
gctgctccgagccgttctgcagcagttaattccctgaggactgggatgatgacacaattt
aaaaatagctttgttgctgcatcatcaaattctaaaaatcaaggaatgattaacacagct
gccacgaatcccaacaagagaatggtcttacaaggctttgtctctggtgggactataggt
ggagatactaacacttcccgtactagttccacatttactgctgctacatctggggcatat
acttctagtcagccagccagagatggaggtaaccagaagagttcagagagttcaaaggag
aagtccagagaaagacggaggccttctggttgggatcgttga
DBGET
integrated database retrieval system
