KEGG   Lycium barbarum (goji berry): 132645676
Entry
132645676         CDS       T09483                                 
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
  KO
K04354  serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
lbb  Lycium barbarum (goji berry)
Pathway
lbb03015  mRNA surveillance pathway
lbb04382  Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:lbb00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    132645676
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    132645676
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lbb01009]
    132645676
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbb03019]
    132645676
   03036 Chromosome and associated proteins [BR:lbb03036]
    132645676
Protein phosphatases and associated proteins [BR:lbb01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-2 (PP2A)
    Regulatory subunits
     132645676
Messenger RNA biogenesis [BR:lbb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Protein phosphatase 2A
     132645676
Chromosome and associated proteins [BR:lbb03036]
 Eukaryotic type
  Centromeric chromatin formation proteins
   Other centromeric chromatin formation proteins
    PP2A (protein phosphatase 2A)
     132645676
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ComGF
Other DBs
NCBI-GeneID: 132645676
NCBI-ProteinID: XP_060218789
LinkDB
Position
1:154235072..154247525
AA seq 561 aa
MNGGDVVAASSAAAPLPLEWKFSQVFGERTVGEEVQEVDIISAIEFDRTGDHLATGDRGG
RVVLFERTDTKEPAGSRRELERMDYPVIRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK
IRWCQMTNGALFLLSTNDKTIKFWKVQEKKVKKISDLNIDPSRGVANGSMPSSSVSSCQK
QYLANGCYTDGSSKCLSNDLPFPPGGLPALRLPVVTSSETSLAARCKRVYAHAHDYHINS
ISTNCDGETFISADDLRINLWNLQISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML
AYSSSKGSIRLVDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASVSDIKFAKAGRYILS
RDYMTLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIYDKFECCLSGDGSRVATGSY
SNLFRVFGCAAGSTEATTLEASKNPRRQVQTPSRPSRSLSSSITRVVRRGLCSSPTSNTS
VISEYLGYLCLWLVNVLKVCKHVLYSPEEQQGRTMICSSIRIYRNASSHNNIYVDIVTLM
VDGYALLIYFYQLRRIWLPAL
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgaacggtggtgatgttgttgctgcttcttcagctgctgctccactgccgttagaatgg
aaattctctcaggtttttggtgagcgtacggttggtgaagaagttcaagaagttgatatc
atctcagctattgagtttgatagaactggtgaccatcttgccaccggggatcgagggggt
agggtggtattatttgaaaggacagatacaaaggagcctgctggaagccgaagagaatta
gagagaatggattatccagtcattcggcatccggaattccgctacaagacagaatttcaa
agccatgagcctgagtttgattatttgaagagtttggagattgaggagaagatcaataag
atccggtggtgccaaatgactaatggtgccctctttcttttgtctactaatgacaaaact
ataaagttctggaaggtccaagagaagaaagttaagaaaatatctgacctgaatattgac
ccttccagaggtgttgcaaatggcagcatgcccagttcaagcgtttcttcatgtcaaaaa
cagtatcttgcaaatgggtgctacacagatggatcttccaaatgtttaagcaatgatttg
ccgtttccacctgggggtcttcctgcattacgtttacctgtggttactagcagtgagacc
agccttgctgctagatgtaaaagagtgtatgcccatgcacatgactatcatatcaattct
atttcaactaactgtgatggggaaacatttatatcagctgatgatctccgtataaacctt
tggaacttgcaaataagcaatcaaagtttcaatattgttgatgtcaagccagcaaatatg
gaagatctaactgaggtgataacttcagctgaatttcaccctacccactgtaacatgttg
gcttatagtagttcaaaaggatcaatacgtttggtagatttgcggcagtcagcattgtgt
gactcgcactctaaattgtttgaggaacaggaagctcctggctctagatccttttttacc
gagataattgcttcagtttcagatataaaatttgcaaaggctggaagatacatacttagt
cgtgactatatgacccttaagctatgggatataaacatggattctggtccagtttcaact
tttcaggttcacgaatatttgagaccaaagttgtgtgatttatacgagaatgattctatc
tatgataaatttgagtgttgccttagtggtgacggttcgcgagtagcaactggatcttat
agcaatctttttcgtgtgtttggttgtgctgcgggaagcacggaagcaaccacattagaa
gcgagcaaaaaccccagaagacaagtccagaccccttcgaggccttccaggtccttgagc
agcagtataacacgtgttgtcaggagaggtctttgtagttctcccacaagcaatacttct
gtcatcagtgaatatttgggttacttgtgcttatggttggttaatgttttaaaagtgtgc
aagcatgttttatactcgccggaagagcagcagggaagaactatgatttgttcttccata
cggatatacagaaatgcttcatctcataacaatatatatgttgacatagtgactctgatg
gtggatggatatgcattattgatctatttctatcaattgcgaagaatttggttgcctgcc
ttgtaa

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