Lycium barbarum (goji berry): 132645868
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Entry
132645868 CDS
T09483
Name
(RefSeq) DNA replication ATP-dependent helicase/nuclease JHS1
KO
K10742
DNA replication ATP-dependent helicase/nuclease Dna2 [EC:
5.6.2.3
3.1.-.-]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132645868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbb03032
]
132645868
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132645868
DNA replication proteins [BR:
lbb03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
132645868
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
132645868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dna2
AAA_12
AAA_11
AAA_30
AAA_19
UvrD-helicase
Cas_Cas4
nSTAND3
AAA_18
DEAD
PhoH
ResIII
FCSD-flav_bind
Motif
Other DBs
NCBI-GeneID:
132645868
NCBI-ProteinID:
XP_060219092
LinkDB
All DBs
Position
6:119186916..119206257
Genome browser
AA seq
1436 aa
AA seq
DB search
MPPKKRTSSGSTKKSTHQNHNLQQQQQQSQPSKFGIQHFFERHSQNTLSQKSKTPLVPHN
SNSNSFQNPKDNSSVSSVSKTDTNVLDSNEREKIGEKGLSFKVNSVSHVKSNGNVIELKV
LERFKDKGIGEGEQKVNSVSKVIKSNGNVTEPDKIIDVGENENKESNVSLKKNEWGSSSQ
NTPTEEKNQAEVTPEFCKSAKRFKFSPGMLIKQSQDDGGDEITWRISPVNERLHAVSKQL
PKMVKVLGDSSRVNSLNIQECSMKKTSPGTERKFEKWFHSPPLKALDKSFVCSNRASLRN
RNTDHTTDLWENNGNSNCQSKAEVINSQSPFQTPPSLTYGSDKPANTVDPNEATDQLGSR
QHKKALIELLDQVEDVISVETKCEETIASHDHDGPAKPAAVLQKLTENICASDQRKESTI
YFLVLEVSEKHGQVGTSGPQCSFKVLRLLNEQIGEERVLQLRDEWCYSVVAPGDTIHVIG
EFDSEGKCEINREKNFLIVHPDILVSGTRVAGSFSCSRRAVLDERLKSGEYSAAALIGTL
LHQMFQAGLIREFPTKEFLEDYARVVLQKSLESLYACGVDENDTHKTLIEAIPKLLNWIR
SFQYSEVSESPSIDFGSEDGVKKIKVSEVIDIEEMAWAPKYGLKGMIDASLQVNVKSNSN
EPNETIMPLEFKTGKATNGQAAMEHNAQVMLYTLLMSERYSQHIGHGLLYYLHTDQTQGI
TVRRSDLVGLIMRRNELANDLLKATITQQLPPMLQSPNMCRGCRHLSVCTIYHKAYGGTT
EGSGLGSVFDSLVSHLTNAHTNFLQKWDQLIDLEAKEVEVAKKQIWSSQSLKNDLYAPCL
SSLVLDTSEGTAPTNFCKGSQFMYRFVHRDWNSLDTHREDDALNSSIFPVKKFESSLRNG
DYVVLSTEPGGILIATGVVADMSCSRISVSLSKRLRLPGSSRTSQAQDLHKQLWRIHKDE
FMGSFAIMRFNLIQLFLQNEQSTHLRKMIVDLEVPRFDSGCQFSQDPAISYIWSEKNLND
DQRRAILKILTAKDYVLILGMPGTGKTSTMVYAVKALLMRGSSILLTSYTNSAVDNLLLK
LKAQGIDFIRIGRYEVVHEEVRENCLSMMDTHDLEEIKQRLEQSKVVAVTCLGITSPLLS
NKRFDVCIMDEAGQTTLPVSLGPLTFSSKFVLVGDHYQLPPLVQSAEARENGMAVSLFCR
LSEAHPQAICALQSQYRMCAAIMELSNALIYGNRLRCGSSEVENAKIKYTGLQSGPTWIK
EVMNPDRPVVFINTDLLLVFETNDRKAVNNPMEANIISEIVCRLLSRGILEEDIGIITPY
NSQADLIRQAVSTSVEIHTIDKYQGRDKDCILLSFVRSSENPRNYISSLLGDWHRINVAL
TRAKKKLIMVGSCITLSNVPLLKLLIEKVEEQGGMLSITKKDIAHKSELRRCSKLR
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgcctccaaagaaaagaacaagctcaggttcaacaaagaaatcaacccatcaaaaccac
aaccttcaacagcagcagcaacaatctcagccgtccaaatttgggatccagcatttcttt
gaacgacactcccaaaataccctctcacagaaatccaagactccccttgttccccacaac
tccaattcaaattcatttcaaaaccctaaagataattctagtgtatcatcagtgtccaaa
actgatacaaatgttttagattctaatgaaagggaaaaaataggtgaaaaaggattgagt
ttcaaggttaattcagtgtctcatgttaaaagcaatggaaatgtgattgaacttaaggta
ttggagagatttaaggataagggaattggggaaggtgaacaaaaggttaactcagtgtct
aaagttattaaaagcaatggaaatgtgactgaaccagataaaataattgatgttggggaa
aatgaaaataaggaaagcaatgtgagtttgaagaagaatgaatggggtagttcttctcag
aatacacctacggaggagaaaaatcaagcagaagtaacgcctgagttttgcaagtcggcg
aaacggttcaagttttctccaggaatgctgatcaagcaaagccaggatgatggaggcgat
gaaataacatggagaatatctccagtgaatgaacgacttcatgccgtgtccaaacaatta
ccaaagatggtaaaggtgttgggggattcatcacgagtcaactccttaaatattcaagaa
tgttcaatgaaaaagacgtctcctgggacagaaagaaagtttgagaagtggtttcattca
cctccactgaaggcacttgataaatcatttgtatgctcaaatagggctagcttgagaaac
cgaaacacagatcacacaacggatttgtgggaaaacaatggaaactcaaactgccagagc
aaagctgaagtaatcaacagtcagagtccttttcagactccaccctctctgacatacggc
agtgataagcctgcaaacacagtcgatcctaatgaagccactgatcagcttggttccagg
caacacaaaaaggcattgattgagcttttagaccaagtagaagatgtaatttccgttgaa
acaaaatgtgaagagacaattgcatcccatgatcatgatggaccagctaagccagctgct
gtcttgcagaaattgacagaaaatatttgtgcaagtgaccaaaggaaagagtcaactatc
tattttcttgtattggaggtttctgagaagcacggacaagttggaacatctgggccgcag
tgctccttcaaggttttgcgcttgctgaatgaacaaattggagaagaaagggttttgcaa
ttgagggatgagtggtgctatagtgttgttgcaccaggggatactattcatgtcattggt
gagtttgacagtgaaggaaaatgtgaaataaaccgcgagaagaattttctcattgttcat
ccagatattttagtatctggaactagggttgctggcagcttcagttgctcaagacgagct
gtgctggatgagaggttaaaatctggcgagtattcagctgcagcattgattggcacattg
ttacatcagatgtttcaggctgggctgatcagagagttccctacaaaagaattcttggag
gattatgcaagggtagtgctccagaagagtcttgagagcctatatgcatgtggagttgat
gaaaatgatacccacaagacattgattgaggcaattccaaaactgctgaattggatacgt
tccttccaatattcagaggtttcagaaagcccaagcattgattttggaagtgaagatgga
gtcaagaagattaaagtatctgaagtaattgacattgaagaaatggcatgggctccaaaa
tatgggttgaaaggcatgatcgatgcatccttgcaagtaaatgtaaaatccaacagcaat
gaacctaatgagacgattatgcctctcgaatttaaaactgggaaggcaacaaatgggcag
gcagctatggagcataatgctcaagtgatgctgtatacccttctaatgtcggaaagatac
tcacagcatattggtcatggtctcctttattatctgcacacagatcagacgcagggaata
actgttcgcagatctgacttggttggcctaataatgcgccgtaatgaacttgcaaatgat
cttctcaaggccactataactcaacaattgccaccaatgttacagagtccaaatatgtgc
agaggctgtcgccacctcagtgtctgtaccatttatcataaggcatacggtggcaccaca
gaaggtagcggcttgggcagtgtgtttgattcacttgttagccatctaacaaatgcacat
actaattttcttcaaaaatgggatcagttgattgacttggaggctaaagaagttgaggtt
gcaaagaaacaaatttggtcttcacaaagtttaaagaatgacctttatgctccttgctta
tcttctcttgtccttgatacgtcagaaggaaccgcaccaacaaatttctgcaaaggaagt
caatttatgtatcgctttgtacatcgagattggaactccttggacactcatcgagaggat
gatgctctgaacagttccatttttcctgtgaaaaaatttgaatcctcgcttaggaacggg
gactatgtggtgttgagtactgaacctggtgggatactaatagctactggagttgttgca
gatatgagttgctctcgcatctcagtatctctttccaaacgcttaaggcttccaggaagc
agccggacttcacaggcacaagatcttcataagcagttgtggcgaattcataaagatgaa
tttatgggttcatttgcaattatgagattcaaccttatacaactgtttctgcaaaatgag
cagagtactcatctgaggaaaatgatagttgatctggaggtgcctaggtttgatagtgga
tgtcaatttagtcaggatcctgccatttcatacatttggtcagaaaagaacttgaatgat
gatcagcgcagagccatactcaagatactcacagcaaaggattatgtgctgatactagga
atgcccgggacaggcaaaacatccactatggtctatgctgtgaaggcactgctgatgaga
ggttcatccattttgcttacctcctatacaaattcagctgttgacaatctgcttctcaaa
ctgaaggctcagggtatagattttatacgtattggaagatatgaggttgtgcacgaggaa
gttcgggagaattgcttatcaatgatggacactcatgatcttgaagagatcaagcaaagg
ctagagcaaagcaaagttgttgctgttacgtgtttggggataaccagcccattgctttca
aacaagagatttgatgtgtgtatcatggatgaagctggacaaactacattgccggtatca
ttgggaccattgacattttcatcaaaatttgttctagttggggatcattatcaattacca
ccacttgtccagagtgcagaggccagagaaaatggaatggcagttagcctgttctgcaga
ctctcagaagctcacccccaagcaatttgtgctttgcaaagccagtaccgcatgtgtgca
gccataatggaattatcaaatgccttgatatatggtaacagattgcgatgtggttcttct
gaagtagaaaatgccaaaatcaagtacacaggattgcaatctgggcctacgtggataaag
gaggttatgaatccagacagacctgtcgtctttataaacacagatttgttgcttgtattt
gaaacaaatgaccgcaaagctgtaaataacccaatggaagcaaatatcatttccgagatc
gtgtgtagattgttgagcagaggtatattggaggaagatataggcatcattacaccctac
aattctcaagcagatcttatccggcaagctgtttccacatcagtggagatacataccatt
gataaataccagggaagagataaagattgcattctgctttcttttgtaagatcaagtgaa
aatcctaggaactacatttcttcattgcttggagactggcacaggattaacgtggctctt
actcgtgctaagaagaagttgataatggtaggttcatgcattacgctatcaaacgtgcct
ctgctaaagcttctcattgaaaaggtggaagagcaaggtggcatgttgagcattaccaag
aaggatattgctcataaatcagaattgagaagatgctccaaactgagatga
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