Lycium barbarum (goji berry): 39333142
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Entry
39333142 CDS
T09483
Symbol
rpoA, E2270_pgp034
Name
(RefSeq) RpoA
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
39333142 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbb03021
]
39333142 (rpoA)
03400 DNA repair and recombination proteins [BR:
lbb03400
]
39333142 (rpoA)
Enzymes [BR:
lbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
39333142 (rpoA)
Transcription machinery [BR:
lbb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
39333142 (rpoA)
DNA repair and recombination proteins [BR:
lbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
39333142 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-GeneID:
39333142
NCBI-ProteinID:
YP_009561859
UniProt:
A0A410SNL1
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Position
Pltd:complement(80343..81356)
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AA seq
337 aa
AA seq
DB search
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD
IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVR
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ
DNQHTVPLSPFTFHDKLAKLIKNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLN
NSQEDLMKIEHFRSEDIKQILGILEKYFVIDLAKNKF
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggttcgagagaaagtaacagtatctactcggacactacagtggaagtgtgttgaatca
agaacagacagtaaacgcctttattatggacgctttattttgtctccacttatgaaaggc
caagccgacacaataggcattgcgatgcgaagagctttacttggagaaatagaaggaaca
tgtatcacacgtgtaaaatctgagaaagtaccacatgaatattctaccataacgggcatt
caagaatcggtacatgaaattttaatgaatttgaaagaaattgtattgagaagtaatcta
tatggaacttctgacgcgtctatttgtgtcaaaggtcctggatatgtaactgctcaagat
atcatcttgccgccttatgtagaaatcgttgataatacacaacatatagctagtttaacg
gaaccaattgatttttgtattggattacaaatagagagaaatcgtggatatcttataaaa
acgccacaaaactttcaagatggaagttatcctatagatgctgtattcatgcctgttcga
aacgcgaatcatagtattcattcttatgggaatgggaatgaaaaacaagagatacttttt
ctcgaaatatggacaaacggaagtttaactccgaaagaagcacttcatgaagcatcccga
aatttaattgatttatttattccctttttacatatggaggaagacaacttatatttacag
gacaatcaacacacggttcctttatccccttttacctttcatgataaattggctaaactc
ataaaaaacaaaaaaaaaatagcattgaaatcgatttttattgaccaatcagaattgcct
tccaggatctataattgcctcaaaatgtccaatatatatacattattggaccttttgaat
aacagccaagaagatcttatgaaaattgaacattttcgtagcgaagatataaaacagata
ttgggcattttagaaaaatatttcgtaattgatttagcaaaaaataagttttaa
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