KEGG   Laccaria bicolor: LACBIDRAFT_170847
Entry
LACBIDRAFT_170847 CDS       T01044                                 
Name
(RefSeq) hypothetical protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
lbc  Laccaria bicolor
Pathway
lbc03040  Spliceosome
lbc04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lbc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LACBIDRAFT_170847
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    LACBIDRAFT_170847
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lbc03041]
    LACBIDRAFT_170847
   04121 Ubiquitin system [BR:lbc04121]
    LACBIDRAFT_170847
   03400 DNA repair and recombination proteins [BR:lbc03400]
    LACBIDRAFT_170847
Enzymes [BR:lbc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     LACBIDRAFT_170847
Spliceosome [BR:lbc03041]
 Complex B
  Other components
   Prp19 complex
    LACBIDRAFT_170847
 Complex C
   Prp19-CDC5 complex
    LACBIDRAFT_170847
Ubiquitin system [BR:lbc04121]
 Ubiquitin ligases (E3)
  U-box type E3
   LACBIDRAFT_170847
DNA repair and recombination proteins [BR:lbc03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    LACBIDRAFT_170847
SSDB
Motif
Pfam: WD40_Prp19 Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_TEP1_2nd Beta-prop_IFT122_1st U-box Beta-prop_WDR19_1st Beta-prop_SCAP zf-Nse Beta-prop_IFT140_1st Beta-prop_SPT8 Rtf2 DUF4073
Other DBs
NCBI-GeneID: 6069152
NCBI-ProteinID: XP_001873610
JGI: 170847
UniProt: B0CP28
LinkDB
AA seq 504 aa
MFFCAISGEPPQEPVVSAKSGKVYERRLIVKYISENGTDPITGDKLEESDLIAIKASPDT
AAPRPPTHTSIPALLHLLQNEWDALVLGTHALEQKYNATRQELSYALYSQDAASRVVARL
IRERDAAREALANVQATLGVAQPANEDVEMAENAAGEDTLPTNIISQIDETHQALSAARK
KRKPPTDYATAVEVKTYVSTHTIPSLHSASPSGITSLAVSRLNPSHFLTGGNDKIVQVYD
RSTDKVLASLKGHSKKVNHVAFRERESDATLVISAGADKIVKIWAHDSASGEYIPKSTIR
SHKGELTGLAVHPTSTILTLCSTDKTYSLHDLSSFTQVFRSIPSEEAFTSLAVHPDGTLL
ALGTPTSTIQIFDIRTGAMAATLSSADAAPFTVNSLTFSENGYHLLAPNSLSSVAIWDLR
KQKATHSISLGDDFKVNKVVYDTSAQYFGVAGSLGARIFAHKTWDELLRLDEGGEVSDLV
FGEQGKEIWGASGREVRIWGLPST
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtttttctgtgccatctcgggtgaacccccgcaagaacctgtcgtttcggcaaagtct
ggcaaagtctatgaaaggcgtctcatcgtcaaatacattagcgagaacggcacagaccca
atcacaggcgacaagctcgaggaatccgatctcattgcaataaaagctagcccagacaca
gccgcacctcgtcctccgacgcacacctcgatccctgcacttctacatctccttcaaaac
gagtgggacgctcttgtgcttggtacccatgcccttgagcaaaaatataacgcgacgcgc
caagaactaagctatgctttgtattcccaagatgccgcaagtcgagtcgtcgcccgtttg
attcgcgaacgcgatgctgccagagaagctctggcaaacgtacaagcgacgctcggcgtt
gcccagcccgcaaatgaagacgttgaaatggctgagaatgctgctggggaggacacactt
cctaccaatatcatctcacaaattgatgaaactcaccaagcgctttccgccgcacgcaag
aaacgcaaaccacctactgattatgccaccgccgttgaagtcaaaacttacgtgtcgact
catacgattccatcccttcattctgcgtcgccgtcaggaattacgtcgttagccgtctct
cgcctcaatccgtcacacttcttgactggcggaaacgacaagatagtgcaggtgtatgac
cgaagtactgataaggttttggcttcgctaaagggtcactcaaaaaaggtcaaccacgtt
gccttccgggagcgtgagagcgacgcaacgttagtgatttctgctggagcggacaaaatt
gttaagatttgggcgcacgactctgcctcaggagagtacattcccaaatcaactatcagg
tcgcacaagggcgagcttaccggactggctgtgcaccctacttcgaccatacttacacta
tgctccaccgacaaaacgtattcactccacgatctctcctcatttacacaagtcttccga
tccattccttcagaagaagctttcacatcccttgctgtccatcccgatggtaccctcctc
gcgctcggtaccccgacgtccacaattcaaatattcgatattcgcaccggcgccatggct
gcgactttatcatccgctgatgctgccccgttcaccgtcaactctttgactttttcagag
aatgggtatcaccttctggcccccaattcgctctcttcagttgccatatgggatttgcgc
aagcagaaagctacacactctatttctttaggtgacgacttcaaggtgaacaaggttgta
tatgatacgagtgcccagtacttcggtgttgcaggaagtttaggtgccaggatcttcgca
cacaagacttgggatgaacttctcagactagacgaaggaggtgaggtgtcggacctcgtt
ttcggggagcaaggaaaagagatatggggggcgagtggaagggaggtccgcatctggggt
ttaccttctacttag

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