Laccaria bicolor: LACBIDRAFT_186980
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Entry
LACBIDRAFT_186980 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lbc
Laccaria bicolor
Pathway
lbc03013
Nucleocytoplasmic transport
lbc03015
mRNA surveillance pathway
lbc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LACBIDRAFT_186980
09122 Translation
03013 Nucleocytoplasmic transport
LACBIDRAFT_186980
03015 mRNA surveillance pathway
LACBIDRAFT_186980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_186980
03041 Spliceosome [BR:
lbc03041
]
LACBIDRAFT_186980
Enzymes [BR:
lbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LACBIDRAFT_186980
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LACBIDRAFT_186980
Spliceosome [BR:
lbc03041
]
Complex C
Other components
EJC/TREX
LACBIDRAFT_186980
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
LACBIDRAFT_186980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
6069990
NCBI-ProteinID:
XP_001873918
JGI:
186980
UniProt:
B0CQW6
LinkDB
All DBs
AA seq
434 aa
AA seq
DB search
MSAHDNEDLIDYEDEHEVIPGGIAASATNGAPSAVDGDDKDKKNFSGIHSTGFRDFLLKP
ELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEV
SVLVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVTKDAEILRDKTKCPHIVVAT
PGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRTTPHHKQVMMFSATLA
KDIRITCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEVSKNKKLSELLDTLEFNQVVI
FVKSVARAIELDKLLVSCNFPSISIHSGLQQEERIKRYTAFKAFEKRILVATDIFGRGID
VERVNIVINYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSDSDQHVMGAIQSRFEVAVP
ELPDHIDPASYMTS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcacacgacaacgaagacctcatcgactacgaggacgaacatgaggttatccct
ggaggaatcgccgcttctgcaaccaacggtgccccttctgctgttgacggcgacgacaaa
gacaagaaaaacttctctggcatacattcaacaggtttcagggacttcctactcaaacct
gagcttttacgcgccataagcgatcttggtttcgagcatccatcggaagttcagcaagag
tgcattccgcaggctgtgctcggcatggacgttctttgtcaagcaaaatctggccacggg
aaaactgccgtttttgtgttggctaccctacagcagcttgagcctgttaacggggaggtt
tcggtgcttgtcctttgccacacccgagagcttgctttccaaatcaaaaacgaatacacc
cgttttgcaaaatacatgccagatgtccgtgttagcaccttttacggtggtacacctgtc
actaaggatgccgaaattcttcgcgacaaaaccaaatgccctcatatagtcgttgctacc
cccggtcgcctgaatgcgcttgccagagacaaagttttggacgccaaaaacgtgaaacat
tttgtgttggacgagtgcgacaaaatgctcgaacagctcgacatgcgccgcgacgtccaa
gaaattttccggaccacccctcaccacaaacaagtaatgatgtttagtgcaaccctggct
aaggatattcggattacctgcaagaagttcatggccaaccctttggaaatatttgttgac
gatgaaaccaaactaaccttgcacggtttacagcaacactacgtaaaacttgaggaagtt
agcaagaacaaaaagttgagcgaacttcttgacacgttggaattcaaccaggttgtgatc
tttgtgaaatcggttgctcgcgccattgagttggataagcttcttgtgtcgtgcaatttc
cctagtatcagtattcactctggtttgcagcaagaggagagaattaagcgctatacggca
ttcaaagcgtttgaaaagcgaattttggttgccactgatatcttcggaaggggtattgat
gtggagcgtgtaaacatcgtgatcaattacgactgccctcccgacgcggacagttacctg
catcgtgttggtcgtgctggtcgatttggcacgaaaggtctggcaatcacttttgtctct
tcggatagcgatcagcacgttatgggtgctatccagtctcgattcgaggtcgctgttccg
gagcttcctgaccacattgatccagccagttacatgacctcgtga
DBGET
integrated database retrieval system
