Laccaria bicolor: LACBIDRAFT_229844
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Entry
LACBIDRAFT_229844 CDS
T01044
Symbol
GTB16201
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
lbc
Laccaria bicolor
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbc03021
]
LACBIDRAFT_229844 (GTB16201)
03036 Chromosome and associated proteins [BR:
lbc03036
]
LACBIDRAFT_229844 (GTB16201)
Transcription machinery [BR:
lbc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
LACBIDRAFT_229844 (GTB16201)
Chromosome and associated proteins [BR:
lbc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
LACBIDRAFT_229844 (GTB16201)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HTH_44
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
SH2
S1
S1_RRP5
HHH_3
Motif
Other DBs
NCBI-GeneID:
6070748
NCBI-ProteinID:
XP_001874883
JGI:
229844
UniProt:
B0CSK5
LinkDB
All DBs
AA seq
1406 aa
AA seq
DB search
MQGSENEEEEDVVMPGVSDDSSEEGEDDEEEAKKVREGFIVSEDEDEEEEAEMERRKRRK
RRKKHHRQRDEDEEVLEDDDLELLEENTGASFKNNRRLTRLRRAVVESSDDDLDHDENLP
RVPDIQRIWDDERRGDEEEEDADMDMDDFIEYSDEEEAGGGMNENAREERRREKRQELER
RKRALGARPELAGIDANAWDEIHDVFGDGHEYDWALGGDDEIEYDEEQLKPEMKYQDVFE
PSEIRKRMLTDDDDLIRAQDIPERMQLATSSLSQSSTLSLHVQLTEADLGGAAMWVTQRL
SLRKQQDFFSPDGQHKNLKGALVMAVTFALRYLFVEEYEVPYIWVHKRDYICHFDASEMR
TRFELLSLNELWRIHSLGQKYRSLVERRRALSASYERLQVKDDYYEEEIQPQIDGVEVVT
DATEWLAMKYKDKKLSSAVEFRFHDDDEPDTTKKRKMPSRISAYEVVKRSIVSKLAQGFG
IEPHHVVLNFMASHHVHFVEDQELNPIVFAEQFADPDPSKAQAPEDILVRARMILSTEIG
KDPLLRSQIRKIFKEEAQISVEPTERGITKIDDNHPYYNFKYLHRKSIKDMQDSAQFLLI
LAAEAEHLVNVSISIPNAAISSFERRLNEAFASDNFSDSAKSWNVERSRVVQEVMELHLI
PAGIKWTREYLREEVEDYLAAQCSNRLRARVDVAPYLVRELKDGEIACSVLAISWGKGDP
HKDAITLVFMDEAGRMREYTKIDNLHDTEMIDEFLDFVKRRKPDLVVMGGFSMSTMKLTR
LVKTTLHGTGPSQGETGWGNPSANEQVFDIPVIYVFDDVARIYQHSRRAADEFGALSPTA
KYCVGLARYTQSPLNEFAALGSDITAITLSEDDQHLVPKEKLLSAFERVLVDVTNKTGVD
INRAVADAYYQNLLPFVCGLGPRKAQVLIKKIGSLGGNLVNRDQFIEGGLLTTKIFLNAA
GFLRIAQEHDPKPTKHRHDGETAPDPLDDTRIHPEDYELARKMATDALELDEEDIHDEHP
SHVVNLIMTDPDNERKLSELNLDEFAISLYEANHDQKRHTLNVIRDELLRPFAEQRNKFV
LPSDWEILTMLSGETPRTLEVGLIVTTQVQRLTKSFINVRLDSGIEGVIATQYLSDSGDL
PDNLVKKGQTIPGVIVERKFDMEQDSFFVELSSRQEELSKGDEQYRRVKIDPMWDGVRCE
KDKDMLARKKRAETDRTRRVVKHPNFHNFNTAQAEAYLEKQQRGDVVIRPSSKGIDHLAV
TWKVDDKLYQHIDATELNADPTGQTVAGQLVVDSNHTYADLDELIVNHIQAMARRVEELM
AHEKFKHGSEDELHLFLKNFLAANPAKSMYGFTLNRKRPGHFNLCFLANKSSPVQTWPVR
VAPEAYYLFDAAAVGVPELCDAFKVR
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggctctgagaacgaagaagaagaggatgttgtgatgcccggcgtgtccgacgat
agctcggaagagggtgaggatgacgaggaagaggcgaaaaaagtaagggagggatttatt
gtcagcgaagacgaggacgaagaggaagaagccgaaatggagcgtcgaaagcgacgtaaa
cggcgaaagaaacatcaccgtcaacgtgacgaagacgaagaagtcctggaagatgacgac
cttgagctccttgaagagaatacaggcgcctccttcaagaataaccgccgtctaactcgc
ctccgtcgtgctgtggttgagtcttcggacgacgacttagatcatgacgaaaatttgcct
cgggttccagacattcaaagaatatgggatgacgagcgtcgaggcgatgaggaggaggag
gacgctgatatggacatggacgatttcattgaatatagtgatgaagaggaggccggtggg
gggatgaacgaaaacgcacgtgaagagaggaggcgagagaaaaggcaagagctagagagg
cgtaagagggctctaggggctcgtccagaactcgctggcatcgatgcaaatgcttgggat
gaaatacatgacgtgttcggagatggtcatgaatatgactgggcattagggggcgatgat
gaaattgaatacgacgaagaacagctgaaaccagaaatgaagtatcaagatgtctttgaa
ccgtccgagattcgcaagagaatgctcactgatgatgatgacctcatccgtgcccaagat
atcccagaacgtatgcagttggcaacctcttccctatctcaatcatctaccctgtctctc
catgtgcagctcacagaagctgatcttggtggagctgcgatgtgggtcacacaacgcttg
tctctccgaaagcaacaggacttcttcagccctgatggtcaacacaaaaatctcaagggt
gctctcgttatggctgtcacttttgcactacgttacctatttgttgaagaatacgaggtt
ccgtacatctgggtccacaagcgagactatatctgccatttcgatgcaagtgaaatgcgg
actcgcttcgaacttctcagcttgaacgaactctggcgcatccattctcttggccagaaa
tacagatctcttgtagagcgccgtagagctctgtcggcttcgtatgaacggcttcaagtg
aaggacgactactatgaggaggagatacaaccccagatcgacggcgtcgaggttgttacc
gacgcaactgagtggttggcaatgaaatataaggacaagaaactgagttctgccgttgaa
ttccggtttcatgatgacgatgagccggataccaccaagaaacgcaaaatgcctagtcga
atttccgcctacgaagttgtcaagaggagcatcgtgtccaaattggctcagggcttcgga
atcgaacctcatcatgttgtcctgaattttatggcttctcatcacgttcacttcgttgaa
gaccaagagctcaatcctatcgtcttcgcggagcaattcgctgatccagatccttcaaag
gctcaagcacccgaagatattcttgtccgcgcgcggatgatcctctccacagaaattggt
aaagatcccctgctcaggagccaaattcgcaaaattttcaaggaagaggcacagatctcc
gtggaacccacagaacgcggtatcactaagatcgacgataatcacccatactacaacttc
aagtacctccaccgcaaaagcataaaagatatgcaggattcagcacaatttttactcata
ttagctgccgaagcggagcaccttgtcaatgtttccatatctatcccaaacgctgcgata
tcgtcttttgagcgacgactcaatgaggcctttgcttctgataatttcagtgattcagca
aaatcttggaacgttgaacgctctcgcgttgtgcaagaggtgatggaactccatctcatt
ccagctggaatcaaatggactcgtgagtatctcagagaagaggtcgaggattatcttgct
gcgcagtgcagcaatcgtctccgagctcgtgttgatgttgctccgtatcttgtccgggag
ctgaaggacggagaaatagcctgttccgtcttagctatatcgtgggggaagggtgatcct
cataaagacgccataactctcgttttcatggacgaagcgggccgcatgagggaatataca
aagatcgacaaccttcatgacacggaaatgatcgacgagtttctcgactttgtcaaacga
cggaaacctgatctggttgttatggggggtttcagtatgtcaacaatgaagctaacccgc
cttgtcaagacgactcttcacggaaccgggccaagtcaaggagaaactggctggggcaat
ccatcggccaacgaacaggtttttgacattccagtcatatatgtcttcgatgatgtcgcg
cgaatttatcagcacagcagacgcgctgctgatgaattcggtgcattatcgcctacagcg
aaatattgcgtcggattggcgcgttacactcaaagtcctttgaatgaatttgcagcattg
gggtcagatatcactgcaattacgttatcagaggacgatcagcatttggtgcccaaggaa
aaactgctttccgccttcgaacgcgtccttgttgatgtgacaaataagactggagttgat
atcaatcgcgctgtcgctgatgcgtattatcagaatcttcttcccttcgtatgtggcctc
ggaccaagaaaagctcaagtcttgataaaaaagataggatcactgggcgggaatctcgtc
aaccgcgatcaatttattgaagggggtcttttaaccacaaagatcttccttaacgctgcg
ggctttttgcgcattgctcaagagcatgatcccaaaccaaccaagcatcgacatgatgga
gaaactgcgccagatcccttggacgacacgcgaattcacccagaggactacgaattggcc
cgtaaaatggccactgacgcccttgagctcgacgaggaagatattcacgacgagcatccc
tcgcacgtagtgaacctcattatgacagacccggacaacgagcgaaagctctcggaactt
aatctagatgagtttgcgatcagtttgtatgaggcaaaccacgaccagaaacgccacact
ctgaacgtgattcgtgacgaactcctgcggccgttcgcggagcaacgaaacaaatttgtt
cttccatctgactgggagatcttgacaatgctcagtggcgagactcctcgaacattggaa
gttggtctgatcgtgacgactcaagtccagcgcctgacgaagagtttcatcaatgttcgc
ttggactctggaattgaaggtgtcatcgccacccagtatctttctgattctggtgacctc
ccagacaatctagtaaagaagggccagaccatacctggagtgatcgttgaacgtaaattc
gacatggagcaagactcgtttttcgttgaattgtcatcgaggcaggaagagctttcaaag
ggagacgagcaatatcgacgcgtgaagattgatcccatgtgggacggcgttcgttgcgag
aaggataaagatatgctggcgcggaagaagagagccgaaacggaccgtactcgacgggtc
gttaagcatccgaatttccataacttcaacactgctcaggcagaagcatacctagaaaag
cagcagcgcggggatgtggttattcgaccgtcttcaaaaggaattgatcatctcgccgtt
acctggaaagtagatgataaactatatcagcatattgatgctactgaactcaacgctgac
ccaactggtcagactgttgccggtcaacttgttgtagacagcaatcacacctatgctgat
ctggatgaattgatcgtcaaccacatacaagcgatggctcgtcgagtagaagaactcatg
gctcatgagaaattcaagcatgggtcggaagatgaacttcatctgttcttgaagaacttc
ttggcagctaacccagccaagagcatgtacggcttcacgctcaatcgaaagcggccagga
catttcaacctttgctttttggccaataaatcatcacctgttcaaacttggcctgtccgt
gttgcacctgaagcatattacctgtttgacgcggcagctgttggggtgccagagctttgc
gacgctttcaaagttcggtga
DBGET
integrated database retrieval system
