Laccaria bicolor: LACBIDRAFT_234758
Help
Entry
LACBIDRAFT_234758 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lbc
Laccaria bicolor
Pathway
lbc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LACBIDRAFT_234758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbc03041
]
LACBIDRAFT_234758
03009 Ribosome biogenesis [BR:
lbc03009
]
LACBIDRAFT_234758
Enzymes [BR:
lbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LACBIDRAFT_234758
Spliceosome [BR:
lbc03041
]
Complex A
U2 snRNP components
U2 related factors
LACBIDRAFT_234758
Complex B
LACBIDRAFT_234758
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
LACBIDRAFT_234758
Ribosome biogenesis [BR:
lbc03009
]
Eukaryotic type
90S particles
Helicases
LACBIDRAFT_234758
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_19
AAA_22
SRP54
nSTAND3
ABC_tran
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
6076223
NCBI-ProteinID:
XP_001880971
JGI:
234758
UniProt:
B0DAG5
LinkDB
All DBs
AA seq
736 aa
AA seq
DB search
MAKNPLHGFLPRNVTAKQVLPSADINPFTKRPSMTSYKEIFKARQKRPVFSQMHEFYEMY
SNNQVLVMVGETGSGKTTQIPQFVVYSDLPQTKGKVVACTQPRRVAAMSVAKRVAEEMDV
SLGKEVGYLIRFEDVTDSTTILKYMTDGMLLREANPLIAMNDPNLERYSTIILDEAHERT
LATDILMGLLKTILKNRYDLKLIVMSATLDAVKFQKYFSLRSDTPAPLFKVPGRTHPVEI
FYTQEPERDFVEAAINTVLMIHRAEDPGDILLFLTGEEQIEDACKKIKLEADELVNQHSE
AVGPLLCLPQYSSMPPQQQQRIFGSPPQPLTPGGPPGRKVIVSTNIAETSLTIDGIVYVV
DPGFSKQKVYNPRIRVESLIETPISKASAQQRAGRAGRIRPGKCFRLYTEDSFMKDLEEQ
THPENLRCNLANTVLELFKLGIKDLVHFDYLDAPAPETIMRALEILHYLGAFNDDGLTPL
GALMATFPVDPQFAKMLVVSPEFKCSNEILSIISMLSVPNVWLRPPNQRKEADAAKALLS
VPDCDHLTLLNVYNSYVQTDGRNKGWASDNYLNARALSQADNVRSHLLCIMERNDLDLLS
INDERRSYDSIKQTLLCGLFTQVAHKQGGSYVTAKDEQIVVLHPSCSLGSEPEWVMFNEF
ILTTRQYIRTVTEIRVSWLLEFSYNYFDPTTFKDGEMKRALQKANERRGGKASDATSSGS
NGGNRRAKKRQRKTEV
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaatcccttgcacggcttcctcccgcggaatgtgaccgcgaagcaggtttta
ccttccgcagatatcaatccattcacgaaaaggccatccatgacatcctacaaagagatc
tttaaggccaggcagaagcgtcccgtcttcagccagatgcacgaattttacgagatgtac
tcaaataaccaggttctggtcatggtaggggagacgggttccggaaaaacaacacaaatc
ccacaatttgttgtctactcggatttaccccaaaccaagggcaaggttgtggcatgtacc
cagcctcgacgtgttgctgccatgtccgtggcgaagcgagtcgcagaggaaatggatgtt
tcgctaggcaaggaagttggatacttgatacgatttgaggatgtgacagactcgacgaca
attctcaagtacatgaccgacggaatgcttcttcgagaggcgaatccactgatagcaatg
aacgaccctaatctggagcgctactctacaatcatattggatgaagcacacgaacgaacc
ctcgccactgatatccttatgggactcctcaaaacaattctgaagaatcgttatgacctc
aagctgattgtcatgtcggcaaccctcgacgcggtcaagtttcagaaatacttcagcctt
cgctctgatacgccggccccgctatttaaggtgccagggcgaacacacccagtcgagatc
ttctacactcaggagcctgagcgcgattttgtggaagcagctataaacacagttctgatg
atccaccgtgctgaagatccaggcgacatactactcttcctgacgggtgaagagcaaatt
gaggatgcctgcaagaaaataaagttggaagcagatgaactagtgaaccagcattcggag
gctgttggtccgcttttgtgtcttccgcaatattcatccatgcctccccagcaacagcag
cggatcttcggtagtcctccccaacctctgactccgggcggtccccccggtcggaaagtt
atcgtgtcaaccaacattgctgagacatccttaactattgatggcattgtttacgtcgtc
gatcctggcttctccaagcaaaaggtatataacccccgtatacgggtggagtctcttatt
gagacgcctatctcgaaagcttctgctcaacagcgggctggtagagctggcaggattcga
cctgggaagtgcttccgcctgtacaccgaggactccttcatgaaggacctcgaggagcaa
acgcatcctgaaaatttgaggtgcaacttggcgaatacggtgctggagctattcaagcta
ggtataaaggatctcgttcattttgattacttggatgcacctgctccggagaccattatg
cgagccctagaaattcttcattacctgggagcgttcaatgacgacggactcaccccactg
ggtgctctgatggcgactttccctgtcgacccgcagtttgcgaagatgttagtagtcagt
ccagagtttaaatgcagcaacgaaatactctctattatctccatgctttcagttccaaat
gtttggttacgaccaccaaaccagcgcaaggaagcagacgctgcgaaggcactgctgtcg
gtccctgattgtgaccatctaactcttctcaacgtctataacagttacgtccaaacagac
ggccgtaataaaggctgggcatccgataactatctcaatgcgcgagctttgtctcaagct
gacaatgttcgatcgcacttgctttgtatcatggagcgtaacgacttggacttactttcc
atcaacgacgagaggagatcatacgactctatcaagcagacccttttgtgcggactcttc
acgcaggttgcccacaagcaaggagggagttatgtgactgccaaggacgagcagattgtt
gtgcttcatccttcgtgcagtcttggatcagagcccgaatgggtcatgttcaatgagttt
atactcacaacccggcagtacatccgaacagtaactgagatcagggtttcctggttactc
gagttctcgtacaattacttcgatcctaccactttcaaagacggagaaatgaaacgcgcg
ctacagaaggcgaacgagcgcagaggtgggaaggcgtcggatgcgacttctagtggctca
aatggagggaaccgacgggcgaagaagaggcaaaggaaaactgaagtttga
DBGET
integrated database retrieval system
