Laccaria bicolor: LACBIDRAFT_249126
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Entry
LACBIDRAFT_249126 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K14327
regulator of nonsense transcripts 2
Organism
lbc
Laccaria bicolor
Pathway
lbc03013
Nucleocytoplasmic transport
lbc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
LACBIDRAFT_249126
03015 mRNA surveillance pathway
LACBIDRAFT_249126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_249126
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
LACBIDRAFT_249126
mRNA cycle factors
P-body specific factors
LACBIDRAFT_249126
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
6075755
NCBI-ProteinID:
XP_001880141
JGI:
249126
UniProt:
B0D8F4
LinkDB
All DBs
AA seq
1031 aa
AA seq
DB search
LDSSLKRHTALIKRIRQSMAADNKEQILKDIDSLSLEKYIDEIAGAVVEGLSRCKTEKDV
WGAVEIISPLHRRFPKTFTPEFVSALSVAISPPSRASLTSIAPEQREKEDNARIIRQRPI
LRVCSELALVGIIKDSSERSGAEWVMKAVKDLLSNDPTLSSLPLLTTFLKSYSRPYLGVV
APATHKQIPNNSNSPTDDEDAGGQFPPIFKEEDELVERDIRDRFKRMCEGYFDNVCKKLV
IEHKRLQEQDKRNHEAYIRSGEIFEDRQQAYEKMTKGYEKLLASCQSLSELLYLPLPSLP
TMSQKSDSIQIGANSSSLLGDTDEVIITGGKWEDEEERRFFEDVQDLKDFVPSSVLGIDD
SSDSEEEISKEKEKERVDREKDEVRKATTPPLSPQLAPQGPSQLLTALLVRLPDATNRAL
IDQAAIDFAFLNSKAARRRLVKFMSQVPKNRTDLLPHYSRLIATLNKYMPDIGTEVVATL
DEEFRYLQRKKNVLKELAEVRLKNIIFLSNLTKFRIVPPHVILHMFKVCLDDFSGTNVEN
IALLLEGCGRFLLRSEDTSERFGTMLELMRRKQSMQHFDQRQLLLLENAYYQCNPPERAP
RQEKLRTPMELFIRHLIYDVLAKRTIDKVLKLVRKLDWENDEVRRILHKVFTKSWKIKYG
NISLLAMLTYDLQRYRPTFAIAVVDQVLEDVRRGLEQNIYSTNQRRVATVKYLGELYIYR
LLSSGIIFDTLWSIVTFGHPDGRPLPHQVVPLDMPDDFFRVRLVCVLLDTCGMCFDRGTQ
KKKLDNFLTFFQYYVLCKESLPMDVDFMLTDSLEAVRPKLEMATTLEQAAIAVDDMFNST
FQTTGSGDDSGDDSGEEGERRDEEQQAEEEEEDLGEQDSPVYQEIVLSASNSSQDNLGPS
EEADAEFAKELAKLVTDNSAESRKVDKKTALALWDSAVLPPAARKKRTDDVDDDTAGDSA
NGHNMTNFTVITKRGNKQLMRQLAVPSESALAVHTRSAQLQDKVEQQHLKRLVLDYEQRE
EAEELRGRFFS
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
ttagactcatcgttaaagcgccataccgctcttatcaaacgaattcgtcagtcaatggcg
gcagacaacaaggagcaaatcttgaaagatattgattctctgtcgttggagaaatatatc
gacgaaatagctggggctgtggtcgaaggtctctcgcgatgtaagaccgagaaagacgtt
tggggggcagttgagatcatctcccctctgcatcgccgctttccgaagacgtttactccc
gagtttgtatctgcgttgtccgtggccatcagtccaccctcacgggcgtctctgaccagt
atagcaccagagcagagggagaaggaagacaacgctaggattatacgtcagcgtcctatc
cttcgagtttgttcagaacttgctttggttggcataattaaggacagctcagaaaggagt
ggcgccgagtgggtcatgaaggcggtgaaagatctgctatccaacgatcccaccctgtca
tctctaccattactcacaacttttttgaagtcatattcccggccttatctcggggtggtt
gcacctgccacgcacaaacaaattccaaacaattccaactcgccaacagacgacgaggat
gcgggaggccaatttccgcctatctttaaagaagaggatgagttggtcgagcgtgatata
cgtgaccgtttcaagcgtatgtgtgaagggtattttgataacgtctgcaagaaattggta
attgagcataaacggcttcaagaacaagataaacgaaatcatgaagcctatattcgttcc
ggtgaaatcttcgaagatcgtcagcaagcctacgaaaaaatgacgaaaggctacgaaaag
ctcttggccagttgccagtctttgtccgaactgctttaccttccccttccctcgcttccc
acgatgtcacaaaaatcggattctattcagatcggcgcgaattcgagttcactcctgggg
gatactgacgaagtgatcataactggcggaaagtgggaagacgaggaggaacgtcgattt
tttgaagatgttcaggacttgaaagactttgttccaagcagcgttttagggatcgatgat
tcaagcgacagcgaagaggagattagcaaggagaaggagaaagagagggtggaccgggaa
aaggacgaggtaaggaaagcgacaacaccgccactttcacctcaactcgctcctcaaggc
ccctctcagttattgacagcccttcttgttcggcttccagatgctaccaaccgtgctctg
attgatcaagctgcgattgattttgcttttctgaactctaaggccgcgcgaaggcgcctt
gtaaagttcatgtcgcaagtgccgaagaatcgaactgatcttttaccgcattattcacga
cttattgcgacgctaaataagtacatgccggatattggcaccgaggttgtagcgacgctc
gacgaagaattccgctatcttcaaaggaagaaaaatgttctgaaggagctggcagaagtc
agactcaaaaacatcatctttctttcaaacttgaccaaattccgaattgtaccccctcac
gttattcttcacatgttcaaagtctgcttggatgatttttcgggaaccaacgtggagaat
attgctttgctattagaaggatgtggtagatttttgcttaggagtgaagatactagcgag
agattcggaactatgttggaactgatgaggcgaaaacaaagtatgcagcattttgaccaa
cgtcagttgttgttgttggagaacgcctattaccagtgtaatcctcctgagcgggctcca
aggcaggagaagctccgaacccccatggaactttttatccgccatctgatttacgatgtt
ttggccaagaggaccattgacaaagttctcaaattagtgcgtaaactggattgggagaac
gatgaggtgcggcgaatcctccacaaagtgttcacgaagtcttggaaaatcaaatacggt
aacatcagtctgttggctatgttgacatacgatctgcaaaggtaccgaccaaccttcgcc
attgccgtggtcgatcaagtactcgaagacgtgcgaaggggtttggaacaaaatatctac
agcacaaatcagagaagagtagcaaccgtgaaatatctcggagagctatatatctatcgc
ctccttagctcgggaatcattttcgatactctctggtctattgtaacattcggccatcct
gacggaagaccactcccacatcaagtagtccctctcgacatgcccgacgatttcttccgc
gttcgacttgtctgcgtcctcctggatacctgtgggatgtgttttgaccgaggaacgcag
aagaagaaattggacaattttttgactttcttccagtattatgtcctatgcaaagagtcg
ttgcccatggatgtggactttatgctcacagactcacttgaggctgtcaggcccaagtta
gaaatggcaacaactcttgagcaagcggccatagcagtcgacgatatgtttaattccact
tttcaaacaaccggcagtggtgatgacagcggtgatgacagtggtgaagagggtgaacga
cgggacgaagagcagcaagccgaggaggaggaggaagatcttggtgaacaagactcaccg
gtttatcaggaaattgtcctttcggccagcaatagttcgcaggacaaccttggcccctct
gaagaagctgacgctgaatttgcgaaagagctcgcaaaattagtcactgataattcagct
gaatcacgaaaagtggacaagaagactgctttggcgctttgggattcggctgtccttcct
ccagctgcaagaaagaagcgaacggacgatgttgacgacgatacggccggtgattcggct
aacgggcataacatgaccaacttcacagttattacgaaacgtggcaataagcagctgatg
cgtcaacttgctgtcccgtccgaatcggcattggctgtacacactcgatctgcacaatta
caagacaaggtcgagcaacaacatttgaagcgactcgtcctcgattatgaacaacgagaa
gaagctgaagagctgagaggtcggttcttctcatag
DBGET
integrated database retrieval system
