Laccaria bicolor: LACBIDRAFT_255896
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Entry
LACBIDRAFT_255896 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lbc
Laccaria bicolor
Pathway
lbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACBIDRAFT_255896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_255896
03041 Spliceosome [BR:
lbc03041
]
LACBIDRAFT_255896
03009 Ribosome biogenesis [BR:
lbc03009
]
LACBIDRAFT_255896
03016 Transfer RNA biogenesis [BR:
lbc03016
]
LACBIDRAFT_255896
Enzymes [BR:
lbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LACBIDRAFT_255896
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
LACBIDRAFT_255896
Spliceosome [BR:
lbc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
LACBIDRAFT_255896
Complex C
U4/U6.U5 tri-SnRNP related factors
LACBIDRAFT_255896
Ribosome biogenesis [BR:
lbc03009
]
Eukaryotic type
Pre-60S particles
Helicases
LACBIDRAFT_255896
Transfer RNA biogenesis [BR:
lbc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
LACBIDRAFT_255896
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
6085196
NCBI-ProteinID:
XP_001889533
JGI:
255896
UniProt:
B0DZY7
LinkDB
All DBs
AA seq
1004 aa
AA seq
DB search
MASPAPVVLDDFETEAKREVAASAGLTGAVEAGTRLELKHQVRHQVAVPPGYDYTPISKH
TPPTKPDREYKFELDPFQKVSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCLNRKQRVI
YTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREV
AWVIFDEIHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNAMQFAEWICKSHEQPCHV
VYTDFRPTPLQHYLFPAGGEGIYLVVNEKGEFREDNFSKAMGKLQDNMGDDPADSRAGKG
KKGKIKKGGDKKGLYLGPSDISKIIKMIMLKNYNPVIVFSFSKRECEGLALTMSKFEFTS
TDEQDLVTNIFNNAIENLAEADRQLPQISNLLPLLRRGIGIHHGGLLPILKEVIEILFQE
GLIKVLFATETFSIGLNMPAKTVVFTAARKFDGREFRNLSSGEYIQMSGRAGRRGLDDRG
VVIMMCDEKLDPAAAKGMVKGEADRLDSAFHLGYNMVLNLMKVEGISPEYMLERCFFQFQ
SSAGIPKLEDELKVEEEERSRVVIPDEELVSQYYDYRQQLDQMAADFREVVTHPEYSIPH
LKPGRLVKVKYQKLDFGWGIAVNWQKRTDAKGRGGPKTETLPAHEQYVVDVLLNCAPGGS
VPKDRNVTAATPGGIQPCAPGQKGVPLVVPVLLSTIEGISHLRIYLPKDLRPDAGRETAW
KSLLEVQRRFPDGIALLDPIENMGIKDSKFLDLVKKIDIMEKKMFSSPLHKDPRLPELYT
LYAKKKESQERIRSLKKRIQATYDVLQLEELKCRKRVLRRLAFTTSADIVDMKGRVACEI
SSGDELLLTELIFNGVFNPLTPEQCAALLSCFVFTEKSEQATKLKEELAAPLRVMQEIAR
RIAKVSKESKLAVDEDEYVSSFKVELMDAVVQWCRGASFSEVCKLTDQFEGSLIRVFRRL
SELLRQMTQAAKVIGNAELKEKFEKASEMLERPNSVIFCSSLYL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggcttccccagctcccgttgtacttgatgatttcgagaccgaagcgaagcgagaagtc
gctgccagtgccgggttgactggtgcggtagaggcaggcacacgccttgagctaaagcat
caggtacgacaccaagtcgccgttcctccggggtatgattacactcccatatcaaaacac
acgccgcctacgaagccggatcgcgagtacaagttcgaactcgatccattccaaaaggtc
tctgtctacgccatacaacgaaacgagagtgtgcttgtatcagcacatactagtgccgga
aaaactgtcgtagcagaatacgccatcgctcaatgtctcaatagaaaacagagagtcatt
tatacaagtcccatcaaggctttgagcaaccagaagtatcgcgaaatgttggcagaattc
ggtgacgtcggtcttatgaccggtgatgtgaccataaatccaactgcgagttgtctagtc
atgactacagagattttacgatctatgctctaccgaggctctgaaatcatgcgcgaggta
gcctgggtcatctttgacgaaattcattacatgcgagacaaagaaagaggtgttgtctgg
gaagaaaccatcatccttctgccccactctgtccgctacgtctttctatccgccacaatc
cccaatgccatgcagtttgcggagtggatatgcaagtcccatgaacaaccttgtcacgtc
gtttacacagacttccgacccacgcctctccaacattacttgttccctgctggtggcgag
ggcatataccttgtggtgaatgagaagggcgagttccgagaggataactttagcaaagca
atgggaaaacttcaggacaacatgggagacgaccccgccgattcacgcgctggcaagggc
aaaaaaggaaagatcaaaaaaggcggtgataaaaaaggtttatatcttggaccttctgat
atctccaagattatcaagatgatcatgttgaagaactacaaccccgttatcgttttctcg
tttagcaagagggagtgcgaaggccttgcgcttaccatgtcaaagttcgaattcacaagt
acagacgaacaggacctcgttacgaatatcttcaacaacgccatcgaaaatcttgcggaa
gctgacaggcaattgcctcaaatctcaaacttgctccctttacttcggcggggcatcggg
atccatcatggtggcttgcttccgattctcaaagaggtgatagagattctgttccaagag
ggccttatcaaggtcctgtttgcaactgagacgttctccatcggtctgaacatgcccgcc
aaaactgtcgtcttcacagctgctcgcaagtttgacggccgagagtttaggaacttgtcc
tcgggggaatacatccaaatgtcaggacgtgcaggtcgacgtggtttggatgaccgaggt
gtagttatcatgatgtgcgatgagaaactagaccctgctgccgcgaagggcatggtaaag
ggagaagctgataggctcgattcagcgttccaccttgggtacaatatggtgttgaacttg
atgaaagtggagggtatcagcccagagtacatgctggagcggtgtttcttccagtttcag
agcagtgctgggatacctaaactcgaagatgagctgaaagtggaggaggaagagcgcagc
agggtggtcatacctgacgaagaacttgtttcgcagtactatgattaccgacaacagctg
gaccaaatggccgctgactttcgcgaggtcgtcacccatccggagtactcgataccccac
ctcaaacctggtcgtttggtgaaagtaaaataccagaaactcgactttggatggggtatc
gccgtgaactggcaaaagcgaactgacgcaaagggtcggggaggtcctaaaacggagact
ttaccggcgcacgaacaatacgtcgttgacgtcctgttaaactgtgctcctgggggttct
gtccctaaagatcgtaatgtcaccgccgccaccccaggtggcattcagccctgtgcccca
ggacaaaagggcgttcctcttgtcgttccagtcctactttcgacaattgaaggtatcagc
cacctacggatatacctgccgaaagatttgcgtccagatgcaggcagggaaacggcttgg
aagagtttattggaggtgcagcggaggttccctgacggaattgcgcttcttgatcctatt
gagaacatgggtataaaggacagcaagttcttggacttggttaagaaaatcgacatcatg
gagaaaaagatgttctcaagcccgctccacaaggacccacggcttccagagctctacacc
ctctacgccaagaaaaaggagagccaggagcgcatcaggtctttgaagaagcgtatacag
gctacgtacgacgtgctgcaactcgaagagctcaagtgcaggaaacgggtcctgcgtcgg
ttggcgttcacaacgtccgctgatatagtggacatgaagggacgcgttgcatgtgaaatt
agttcaggggatgaactgcttttgacagagttaatattcaatggcgttttcaacccgttg
actcctgaacagtgtgcggcgctgctgagttgttttgtgtttactgagaagagtgaacaa
gcaacgaaattgaaagaagagcttgctgcgcctctccgagtcatgcaagagatcgcgagg
cggatagcgaaggtatccaaggaatccaaacttgctgtcgatgaagacgaatacgtgtcc
tcgttcaaggtggagttgatggatgcagtggtccaatggtgtcgtggggcctcgttttcg
gaggtttgcaagttgacggaccaatttgagggaagcttgattcgcgtgttccgccgtcta
agcgagcttctccgacaaatgactcaagcggccaaggtcatcgggaacgctgagctgaag
gaaaaatttgaaaaagcgtcagagatgctggaacggccaaattccgttattttctgttca
tcattgtatctttaa
DBGET
integrated database retrieval system
