KEGG   Laccaria bicolor: LACBIDRAFT_291759
Entry
LACBIDRAFT_291759 CDS       T01044                                 
Name
(RefSeq) hypothetical protein
  KO
K12878  THO complex subunit 1
Organism
lbc  Laccaria bicolor
Pathway
lbc03013  Nucleocytoplasmic transport
lbc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lbc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LACBIDRAFT_291759
  09122 Translation
   03013 Nucleocytoplasmic transport
    LACBIDRAFT_291759
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbc03019]
    LACBIDRAFT_291759
   03041 Spliceosome [BR:lbc03041]
    LACBIDRAFT_291759
Messenger RNA biogenesis [BR:lbc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     LACBIDRAFT_291759
Spliceosome [BR:lbc03041]
 Complex C
  Other components
   EJC/TREX
    LACBIDRAFT_291759
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    LACBIDRAFT_291759
SSDB
Motif
Pfam: efThoc1 HTH_Cmi2_C
Other DBs
NCBI-GeneID: 6068945
NCBI-ProteinID: XP_001873478
JGI: 291759
UniProt: B0CNA6
LinkDB
AA seq 732 aa
MTSLQPFLTSLLKSLPPPPAAQDVLNELIKKTLQDAKDKASPENRKSQWEYLLKNEIFIL
ASKEGQALKDPNTKYYDELRDKLDVVLTFTEHDACEQTFPFIVLQDLLETQTIASCSHIF
SWIEARAERLTEGMVPQKGKALILLRTLNDLLRRLSKMGTTTIFCGRILTFLSGVFPLGE
RSGVNLRGEYGPTWEGVSLGEKTKADDKHVEMEVAKSLEEPESKEGEAQGDKMQVDSKEV
KKPVPTEGLAEKKDAFYNTFWALQLPFSKPPLFAADGTFEDFKERVNKVMPVIKEATAKE
RAMMGSRGVAGTGASLKRKRDLDSEESNSNEYFFAKFLTSPDLLDLEIADTHFRRQFLFQ
LLILLNHLLTFTKTAKAAWTSTRNRSLQMDFTLEDNEAQWVQESITKVTEELRQTTPNGR
IFAETISAILDREKNWVRWKNELCAPFDKEPWFVEQEGKFLDLFDATAPIRAKMREPPED
WKWQLGTEPLTEIWDMGYRDLTDLQNPFQPGDVKDFVKKIKQEDARIELRKRNLTKTAER
LALAQARAAAAKAAVTTETKETVPSASTSAETLSAPRPLVGSNQTSSSLHPSLPPKPGSP
VKPSLSQDTVRNATPAPAVPVIAIAAPVPAPSPAPTPAPTAALPDEQISKFEENKQRWSW
LALRTARDQYLQHFGKIGTGDIELLAQEIEKEKEKPQKGEECSGFNSFRSPTLPTVPRPR
QPPMATHTSPLK
NT seq 2196 nt   +upstreamnt  +downstreamnt
atgacctccctccaacctttcctcacgtctctactcaaatccttgccccctccccctgct
gcacaagatgtccttaatgaactcataaagaagactctacaggacgcgaaagacaaagcg
tctccagaaaatcgaaagagtcaatgggaatacttgctcaagaatgaaatatttattctt
gcctcgaaggaaggccaggctctcaaagacccaaacacgaaatattacgacgagttacgc
gacaagcttgacgtggttctcacattcacggagcacgatgcctgcgagcaaaccttcccc
ttcatagtcctccaagacctccttgagacccagacgatcgcctcttgttctcacatcttc
tcatggatcgaggctcgggctgagagactaactgagggaatggttccgcagaagggcaaa
gcacttatcctcttacgtacgctgaacgacctgctacgccgtctttctaagatggggacc
acgacaatcttctgtggtcgaatcttgacctttttgagtggcgttttccctcttggtgag
agaagtggtgtaaatctccggggcgagtatggacccacatgggagggcgttagtctgggg
gagaaaaccaaggcggatgataaacatgtggagatggaagttgcgaaaagcctggaggag
cccgaatcgaaggaaggtgaggcgcagggtgataagatgcaggttgactccaaagaggtg
aaaaagccggtgccaacggaaggtcttgccgagaaaaaggatgcattttacaacacattc
tgggcccttcagctgcccttttccaagcctccccttttcgctgcagatggcacgttcgag
gactttaaggaacgcgtcaacaaagtcatgcctgtcataaaggaggccactgctaaagaa
agggcgatgatgggaagcagaggtgtagcagggactggagcttccctcaagcggaagaga
gacctcgacagtgaagagtcgaactcaaacgaatatttcttcgcgaaattcctcacgagc
cctgaccttctcgacttggagatcgccgatacccatttccgtcgccaatttctgttccaa
ctcctaattctgctcaatcaccttctgactttcactaaaaccgctaaagcggcttggacc
tccacacgcaaccgatcactgcagatggacttcacgctcgaggacaacgaagctcaatgg
gttcaagaatctattaccaaggttactgaggagttacggcaaacaacccccaatgggcgg
atctttgcagaaactatcagcgccattttagatagggagaagaactgggttcgatggaaa
aatgagctttgtgctccttttgacaaggagccttggtttgtcgagcaagaaggaaagttc
cttgatttgttcgatgcaactgcgcctattcgggcgaagatgagggaaccacctgaggac
tggaaatggcaattgggcacggaaccattgactgaaatatgggacatgggctacagagat
ttgactgatctccagaatccattccagcctggcgacgtgaaagatttcgtcaagaaaatc
aaacaagaagatgcacgcattgaattgcgaaaaagaaatttgaccaagaccgcagagcgc
ctcgccctggcacaagctagagctgcagctgcaaaggcagctgtgactacagaaacgaag
gaaacggttccgtcagcgagtacctcagctgaaacgttgtccgctccccgacccttagtc
ggatcaaatcaaacgagctcttctcttcatccttctcttcctccgaaacctggttccccg
gtgaagccatcactttctcaagataccgtacggaatgcaacacccgcgccagctgtacca
gttatagctatagctgctccagtgcccgctccttcgcctgcaccaacgccggcacccaca
gcagctcttcctgatgagcaaatatcgaaatttgaggagaataaacaacgatggtcatgg
ctcgcgctccgtacagcccgcgatcaatatttgcaacatttcggaaagataggaactggg
gacattgaacttctcgcgcaggaaattgagaaggaaaaagagaagccccaaaagggagag
gagtgttcagggttcaattcctttcgctcccctacgctccctaccgtgccaagaccgcgt
caaccacctatggcgacacacacatctcccctcaaa

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