Laccaria bicolor: LACBIDRAFT_302749
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Entry
LACBIDRAFT_302749 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lbc
Laccaria bicolor
Pathway
lbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACBIDRAFT_302749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_302749
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LACBIDRAFT_302749
mRNA degradation factors
5'-3' decay
Decapping complex
LACBIDRAFT_302749
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
PAC2
Motif
Other DBs
NCBI-GeneID:
6079421
NCBI-ProteinID:
XP_001883733
JGI:
302749
UniProt:
B0DI74
LinkDB
All DBs
AA seq
930 aa
AA seq
DB search
MSFFGLPQHDLEYEKLRFGHGPLREPDGVAVYTWGEESYDGLGDALQEGGDDLNDETFGA
VGSIGKDFDFSASALPEDDFLSKSIPPSTSIKGQLSRNEVTQSPPPTQLPRSTSHSLEAI
WDDKSPFSVLPRANGANRMSEHQRNSPAPSPPRFSPFGAGTSPLISHQHPIGHGVGHNQQ
RARTLQEIEAEMLAAVQESRQRELLMLQQRKLLEEEQHMRLLQEQERQKRLFQEQQLQRL
LQHQQERTPPPRMMPVSQSPRFLEHPRQILLLQHQQEQQQQQRLQDLQEQLRLEELERRM
IAQMTLQQTQNGNQNNLHRQASNLSFAEIQAAQAFHQQQRRQRSRSPAIGNHQILQESVQ
HHANKVQLQQRLLSEMAQAEFSGDFQAVSQADQEALRAEAMRKIVEAEKMEEKRRKKARY
NDLMTQSDKDFITRIQVSQLVTQDPYADDFYAQVYGAILRSRLGLQSQDERVIKFGSGGG
VGLGLAQKGGNRRPSAMQRMEQQVERIVSNARKREEEKGLHSIHSLQGALGKTSGRSYKA
APRQLLQVDAGNASPSPTLSPAHIHISKVSVYHEGAAKEAAKLGREALGNAADTHNLVRQ
DPLSQRQVLTILEKLYDLILSVEQLRRDQPLPEEDEEVFLQWKTEYDGLVDQVWEELRVM
IPLETSDPHPFISLLYPTKGKKILPRLTRHLSSARMLTLLTLLVACFHQLDVVNQAPVLD
SLVDSTERVDAERQTQAFLGSVMQSILPVVSVANLRLATGLLGLLLDRSDIAAVAQTRPG
LALLTLFLSRVEVIKQMAATAPDMSEIPSTEESQQWKLMFDHLFQLLAPHLLLLFPSTRI
AQTSISGHPDLPNPTDIADQPVWQFLAALALHAAVEQHQVLVTVLREKVLDNVLSVNKGW
VADENERQTKLANVNLFLHALGLDSSQIVM
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcttcggtttaccccaacacgatttagagtacgaaaaactacgttttggtcat
ggtccgctgcgcgaaccggacggtgtcgcagtctacacttggggagaggagagttacgac
ggtttgggtgatgccctccaggagggaggcgatgatctaaatgacgaaacttttggcgct
gtgggttctatcggcaaagacttcgacttctctgcctcagcattgcctgaagacgatttc
ctgtcaaaatcaatccctccttctacatcgataaaggggcagctatcacggaacgaagta
acccaatcccctccaccaactcaacttccccgctccacctctcattctcttgaagcgata
tgggacgacaagtctccgttctctgttcttccgcgagctaacggcgccaaccgcatgtca
gagcatcagcggaattcaccagccccatcccctcccagattttcacctttcggcgctggt
acatctcctttaataagccaccaacaccccatcggacatggcgttggtcacaatcagcaa
agggctcgtaccttacaggagatagaagcagaaatgctcgccgctgtgcaagaatcccgc
caacgagagctcttgatgcttcaacagcgaaagctactagaggaggaacagcacatgcgg
cttttgcaggaacaagagcgccagaaacgtctttttcaggagcagcagctccaacgcctt
cttcaacaccagcaggagcgaactccccccccacgcatgatgcccgtgtcccagtctccc
aggtttctggaacatccccgacaaattttattgttgcaacaccaacaagagcagcagcag
cagcaacgcttacaagaccttcaagagcagctgcgacttgaggagcttgagcggcggatg
attgcccagatgaccttgcagcaaacccagaatggaaatcaaaacaatcttcatcgacaa
gcttccaatttatcgttcgctgagattcaagccgctcaagctttccatcaacagcaacgt
cgccaacgttcacgttcaccggccattggaaatcatcagattttgcaagaaagtgtgcag
catcatgctaacaaggtccaacttcagcaacgcctcctttcggagatggcccaagccgaa
ttttctggagattttcaggctgtctctcaggcagatcaagaggctttgcgggccgaggcg
atgcgcaaaattgtcgaggcggagaagatggaagagaagcgaagaaaaaaagcgcgatat
aacgatcttatgacccagtccgacaaggacttcattacgagaattcaggtctctcaactc
gtcactcaagatccgtatgccgacgatttttatgcccaagtctatggcgcaatcttgcgt
tctagactgggcttgcaatcacaggatgaacgggttatcaagtttggttcgggcggcgga
gtcggtttgggactggcacaaaagggcggcaacaggagaccaagcgcaatgcaacgaatg
gagcaacaggttgaacgtattgtcagcaatgcgagaaaaagggaagaggaaaagggattg
cattccattcacagtttgcaaggtgctcttggcaagacctcgggacgcagttacaaagct
gcgcctcgccagcttctccaagttgatgctggcaatgcaagcccgtcgccaaccttgtcg
cctgcccacattcatatatcaaaagtttctgtttaccatgagggggcagccaaagaggca
gccaaacttggtcgtgaggctctgggcaacgctgcggatacgcacaacttagttcgacaa
gaccctctgtctcaaagacaggttttgaccatcctcgaaaagctttatgatttgattttg
agtgttgagcaattaaggagggatcaaccgcttccagaggaagacgaagaagtgttcctt
caatggaaaacagaatatgacggtcttgtcgatcaggtgtgggaggagctaagggtgatg
attcctttggagacgagtgatccccaccccttcatttctctgttgtatcccacaaaaggg
aaaaagattctgccgcgtctcactcgccatttgagcagtgcgcggatgcttacattgttg
actcttctggtcgcttgtttccatcaactggatgttgtcaatcaggctcccgtactggat
tctctcgtggactctaccgaacgcgtcgatgctgagcgacagacacaggcatttttgggc
agtgtcatgcaaagcattcttccagtagtgtcagtcgcgaatttgcgccttgcaactggt
ctgcttggcttgcttcttgatcgtagcgacattgctgcggttgcacagacaaggcctgga
ttagctctgttgacgctgtttcttagtcgcgtggaggtgataaaacagatggctgccacc
gctcctgatatgtctgagattccatccactgaggagagccaacaatggaaacttatgttt
gatcatctattccaactccttgcacctcatcttttgcttctcttcccatcaacacgcatc
gcacaaactagtatttctgggcatcccgatcttccaaatccaacagacattgctgaccaa
cctgtttggcaattccttgccgcactggctctgcacgccgctgtcgagcaacaccaggtt
ttggttaccgttctacgcgaaaaagtccttgataatgttcttagtgtgaataagggctgg
gttgccgacgagaacgaacggcagacaaagttggcgaatgtaaatttgttcctacatgca
cttggcctagatagttctcagattgttatgtaa
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