KEGG   Laccaria bicolor: LACBIDRAFT_311542
Entry
LACBIDRAFT_311542 CDS       T01044                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
lbc  Laccaria bicolor
Pathway
lbc03013  Nucleocytoplasmic transport
lbc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lbc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LACBIDRAFT_311542
  09122 Translation
   03013 Nucleocytoplasmic transport
    LACBIDRAFT_311542
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbc03019]
    LACBIDRAFT_311542
   03041 Spliceosome [BR:lbc03041]
    LACBIDRAFT_311542
Messenger RNA biogenesis [BR:lbc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     LACBIDRAFT_311542
Spliceosome [BR:lbc03041]
 Complex C
  Other components
   EJC/TREX
    LACBIDRAFT_311542
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    LACBIDRAFT_311542
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WD40 Beta-prop_EML_2 WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR3_1st Beta-prop_Aladin ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR35_TULP_N Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd CFAP251_N WD40_MABP1-WDR62_1st PD40 Cytochrom_D1 Beta-prop_HPS5 DUF7099 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 6072739
NCBI-ProteinID: XP_001876556
JGI: 311542
UniProt: B0CXM9
LinkDB
AA seq 371 aa
MSQTPSKDDDEFPQPQRPPSPPPHTTFTARGVHAPTFSAFKPRDYRMPSSQAMTHVAWNC
DGKKLAAVGIDKITRVWSPEKSVSTLHLVTSSPALLWSILKMEMRAATNFSGGHSDDVDY
VSWNPTHPDLFCTSSQKDRRIVFWDARQSRYIQQCPVKISPVQTSYSPDGRSLLFASAGH
QLFFMTLGKEGEETKEQWHVSDKDAIGSTAIFNHVGDGVILTHHSEHTLRVMDYPSLAIR
ESPAAHVGGCVALALDPRGRYLASGGYDSIVNMFDLNDWICARTITACENSISALSFSHD
GEYLAIANAGPYIDICATETGVPLHRVPALAPSPTVTWHPSKYVIAYCGQTKIREGGPPP
VAVISMFGLLE
NT seq 1116 nt   +upstreamnt  +downstreamnt
atgtcccaaacgcccagcaaagatgatgatgagtttccccagccacaaaggcccccatct
cccccacctcacaccacattcacagcaaggggtgtccatgcgccaacgttctccgccttc
aaacctcgcgactaccgtatgcctagttcgcaagccatgacccatgttgcctggaactgc
gacgggaagaagttggccgccgttggcatcgataaaattacaagagtatggtccccagag
aaaagtgtgagtactttgcacctggtaaccagttcacccgccttactatggtcaattctc
aagatggagatgagagctgcgacaaatttctctggtggacattccgatgatgtcgattac
gtctcttggaacccgacacaccctgatttattttgcacatcaagccaaaaggatcgacga
attgtattctgggatgcacggcaaagccgttatatacagcaatgcccagtgaagatatct
cccgtgcagacaagctattctccggacggtcgttctcttttgtttgcatctgcaggacac
cagttatttttcatgacccttggaaaagaaggcgaggaaacgaaggaacaatggcacgtc
tctgacaaagatgcgataggttcaacggcgatcttcaaccacgtcggtgatggtgttatt
ttaacacaccactctgaacataccctccgcgtaatggattacccttccctagcaatacgg
gagagtcctgcagcccatgttgggggatgtgtcgcgcttgcgttggatcctcgcggacga
tatctagcatctgggggttatgattctatcgtgaacatgttcgatctgaacgattggatt
tgtgctcgtacaattaccgcatgcgaaaacagcataagtgctcttagcttctcccacgat
ggcgagtatcttgctattgcaaacgcaggaccatacatcgatatctgtgctacggaaacc
ggcgttcctttgcatcgtgttcctgcacttgcaccttccccgacagtaacctggcatcca
tccaaatacgtgattgcttattgtggtcagaccaagatacgtgaaggtggaccaccaccc
gtcgctgtaattagcatgtttgggttacttgagtga

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