Laccaria bicolor: LACBIDRAFT_311642
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Entry
LACBIDRAFT_311642 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lbc
Laccaria bicolor
Pathway
lbc03013
Nucleocytoplasmic transport
lbc03015
mRNA surveillance pathway
lbc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LACBIDRAFT_311642
09122 Translation
03013 Nucleocytoplasmic transport
LACBIDRAFT_311642
03015 mRNA surveillance pathway
LACBIDRAFT_311642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_311642
03041 Spliceosome [BR:
lbc03041
]
LACBIDRAFT_311642
03009 Ribosome biogenesis [BR:
lbc03009
]
LACBIDRAFT_311642
03012 Translation factors [BR:
lbc03012
]
LACBIDRAFT_311642
Enzymes [BR:
lbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LACBIDRAFT_311642
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LACBIDRAFT_311642
mRNA cycle factors
Stress granule specific factors
LACBIDRAFT_311642
Spliceosome [BR:
lbc03041
]
Complex C
Other components
EJC/TREX
LACBIDRAFT_311642
Ribosome biogenesis [BR:
lbc03009
]
Eukaryotic type
90S particles
Helicases
LACBIDRAFT_311642
Translation factors [BR:
lbc03012
]
Eukaryotic type
Initiation factors
eIF-4
LACBIDRAFT_311642
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
TniB
Motif
Other DBs
NCBI-GeneID:
6072199
NCBI-ProteinID:
XP_001877056
JGI:
311642
UniProt:
B0CXX1
LinkDB
All DBs
AA seq
396 aa
AA seq
DB search
MAGINTGDEKLVFESSEAVSVVSTFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPITQG
RDVIAQAQSGTGKTATFSISILQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNK
GFKDQIYDVYRYLPPATQVILLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKE
RDAIMAEFRGGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEQFYSTQIDEMPVNAAELI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggctggcattaacacaggtgacgagaaacttgtatttgaatcgtcggaagccgtctcc
gttgtttcgacgttcgacgacctcggtttgaaggaagatcttcttcggggaatctacgca
tacaactttgagaagccttcagctatccaacagcgcgcaattttacccattacgcaaggc
cgggatgtcatcgcacaagcccagtcaggaactggtaaaactgccacattctctatctcc
atcctccaatccatcgacgtcaccgttcgcgaaacccaagccctcgttctgtcgcccacg
cgtgaacttgccacgcaaattcaatccgttgttcttgccctcggcgactacatgaatgtc
caatgtcatgcctgcattggcggtacgtctatcggagaggacatcaggaagctggaatat
ggccaacatgtcgtttctggcactcccgggcgcgtgtttgatatgattcggagaaggagt
ttgcgaacgcgaaacatcaaaatgcttgttctggacgaagccgatgaactactcaacaag
ggtttcaaagaccagatttacgacgtctatcggtaccttccccccgccacccaagttatc
cttctcagcgctaccctcccctatgacgttctagaaatgacgacaaaattcatgacagac
cccattcgcatcctcgttaagcgtgacgaattgacgctggagggaatcaagcagtttttc
gtagctgttgaaaaggaagattggaaattcgacacactgtgcgacttgtatgataccctc
accatcactcaggcggttatcttttgcaatacaagacgcaaggttgactggttgacggaa
aaaatgcgagcttcaaatttcactgtatcatcaatgcacggtgaaatggtacaaaaagag
cgtgacgccattatggccgaattccgtggtggaacttcacgcgttttgatcacgacggat
gtgtgggcccgaggtatcgatgttcagcaggtttcattggtcatcaattacgatcttcct
gccaatcgcgagaactacatccatcgcattggtagatcaggtcgctttggaaggaagggt
gttgccatcaactttgtcactgttgatgatgttcgaatcttgcgggacatcgaacaattc
tacagcacgcagatagacgaaatgcctgtcaatgctgctgagcttatctga
DBGET
integrated database retrieval system
