Laccaria bicolor: LACBIDRAFT_313546
Help
Entry
LACBIDRAFT_313546 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
lbc
Laccaria bicolor
Pathway
lbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACBIDRAFT_313546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_313546
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
LACBIDRAFT_313546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_CcmH_CycH
TPR_1
TPR_14
TPR_19
TPR_2
TPR_17
TPR_16
TPR_11
TPR_12
TPR_9
ANAPC3
TPR_7
TPR_22
PknG_TPR
HemY_N
Motif
Other DBs
NCBI-GeneID:
6072901
NCBI-ProteinID:
XP_001877683
JGI:
313546
UniProt:
B0D085
LinkDB
All DBs
AA seq
1329 aa
AA seq
DB search
MGLSKFYELNNKWDRYFDTLTILLKLYSGLQDAQKSADTLQRLLESYRQHGTRMQVANGL
SLLLPGSPFFSLLATLPAPDPTHPTSATVTPQAAVHNTLPILEEVISLTEAEEEGVFKRE
IEKRRTRLGASSPEQLRKEVFKEISTESKLPIFYHEVLNHPNTSDDLRRLTESKLLRYKQ
RQLHSLPNTADLVGIKAKLVTEINNLVDGVILLQVPDELAWTMFFEKCDCEDISGYGTEV
VAQFITLFAKSPMTALFKGYLRYRGVPFITGHEALSDDSEDPLDVIFNAYPAVSHTIFAN
RIVSDVYLADGDYEKTVKAAKQGLACLDGFQVDTGMHLQRTHMGIQAVLATSLVHLFPPK
YFEQASVLIDEVLAFSPENILCLMGRAYIYQAKGEWNDAELLFCRITQLLPDDLDIGLRA
REERAWCQCQMNDFDNGLSGLQSVIISLNHIHGRDSDVSRCLWRLGSSHWRLGGDEREAA
YKFFIAALKHDPAFAPAFSSLGTYYLECACPSDPIRASKCFQKAFELDPRESMAAKRLAE
GFADDGEWELVEVIAKRAIEGEGGLDAGFKEGASGALPKNSWAWAAVGVVELHRQNYPAA
IQAFQIALRAEPDDQSLWLRLGESYGKAGRLAAAVKALGRASALDSGDWGCSYLIGDIER
RMGHFQNAINIFKSILDSHPSEVGVLFSLSQTHLDLGQMESSSGFPLRSEDSITAAIQIA
LAMIKGSFGFRSVAWKVITDAAFLLSDSSGFVDEGSVRLLFQDANNLFLDGCSQLAGFMN
KRNLQDDLPLSGAAALEVAIFASASRLSIGASDQLSRGSAWYDLGISLYSWTICSRHAAD
ALRIQARAIECLTSALQEDPENEVYWNSFGSAQFLLRPIIAQHAYIKALDINPKRATTWV
NLGLLYVHYGDFELATKSLHRGQVLDPDCTLAWLGQALIAKANGDNVSTRALLEHACSLS
ATLPQADYEFAFHLFQEAKLLTFDALLPAYFLIERYCGRQPDDAAGLHLFALICEGLGHV
TFGENLVSRVIAILEVAYEELEETEVENQYIIANLTLGRLRLSLGDYQGAISSFESAMGL
LQGENHNSVENLHYQSCLGSGLAHFMANEFQIAISVFQEAQVVTDNILLKGKINVLLAQM
MWAAGADDHKAIAKVQLLECISRDPENLSAINTLAGMGILTCDDSLVEAALAEILSLPVE
ERSKMDPQRDADYLLVQHYLGQNHIRKALAIAQKNVYMVPADVNARQALASLTLRAKQAG
STLGIVGLPSCEVGERSRLLRLQAVAQLTGASSSSKSPVQLAQRAVMLSPSDIDGWKTLA
YVQACLQKR
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgggcttgtccaaattttatgaactgaataacaagtgggaccgatacttcgatactttg
acaatcctgttgaagctgtacagcggattgcaggatgcacagaaatctgcggacaccttg
caaaggctgcttgaatcgtacagacaacatggcacacgtatgcaggtggcgaatggattg
tcgcttttactccctgggtcccctttcttttcactacttgcgacacttccagcccctgat
cctacacatcccacatccgcgactgtgactcctcaggccgcagttcacaatacgcttccc
atcctcgaagaggtgatttcgttgacagaggcggaagaagagggagttttcaagagagag
atcgagaagcgcagaactcgattaggtgcctcgagtccggagcagctgaggaaggaggtg
ttcaaagagatatctacggaatcaaaattgcccatcttctaccatgaagttctgaatcat
cccaacacgtcagatgatctacgtcgcctcacggaatcgaaacttctacgatataagcaa
cggcaacttcactctttgccgaatactgctgacttggttgggattaaagcaaagcttgtg
accgagatcaacaatcttgttgatggcgtcatattattacaagttcccgatgagctagct
tggacaatgttttttgaaaagtgtgactgtgaagacatatctggttacgggactgaagtc
gttgcacaattcataacactatttgccaaatcaccaatgacagcccttttcaaaggttac
cttcgctatcgaggggtacctttcataaccggacatgaggctctttctgacgattcagaa
gatcctcttgatgttatctttaacgcttatcccgcagtttcgcataccatttttgccaat
cgcattgtgagcgacgtatatctggctgatggtgattatgagaaaactgtgaaagcagca
aaacaaggcttagcgtgtttggatggttttcaggtcgacactggtatgcatctacaaagg
actcatatgggaattcaagctgttctcgcaacatcgttggtccatctctttccgccgaaa
tactttgaacaagcatcagttctcattgatgaagtcctagctttctccccagagaatatt
ctgtgcctaatgggccgtgcttacatctaccaagcgaaaggggaatggaatgatgcagaa
cttcttttctgccgtatcactcaactccttccagatgatctcgacattggtttgcgtgcg
agggaagaaagagcatggtgtcaatgtcagatgaatgatttcgacaatgggctttctggc
cttcaaagtgttatcatttcgttaaatcacatccacggacgagattccgacgtctctcga
tgtctttggcggctcggaagttctcactggaggttgggtggcgatgaacgtgaggctgcg
tacaaattcttcatcgcggcactcaaacacgatcctgcatttgctcctgcgttttcctcg
ctgggaacgtactatttggagtgtgcatgtccttcagatccgattcgtgcctcaaaatgt
tttcagaaggcattcgagttggatcctcgcgaatctatggccgccaaacgattggcagag
ggctttgcggatgacggagaatgggagttggtggaggtcatcgctaagagagcaatagaa
ggagaaggaggtttggatgcagggtttaaagagggtgcctcgggggctctgccaaagaat
tcgtgggcttgggcagccgttggagtggtagagcttcacagacaaaattatcccgcagct
atacaggcatttcaaatagcactccgagcggagccggacgatcaatcactttggcttcgc
ctcggagaatcctacggcaaagctggacgacttgcagcagcagtgaaggctcttggtcgc
gcatctgcgctagattctggtgactggggctgctcctacctcattggagatatagagcgc
cgcatgggtcactttcaaaatgctatcaacatattcaagtccatcttggattcgcacccg
tctgaagtcggagtccttttctccttgagccaaacacatcttgatcttggccaaatggaa
tcttcaagtggctttccactacggtctgaggattccattacggcagccattcagatagct
cttgccatgatcaaaggaagtttcggatttcgcagtgtggcgtggaaagtaatcacagat
gccgcttttcttctttcggactcctcaggctttgttgatgaggggagtgtgcggttactc
tttcaagatgccaataaccttttcttggatgggtgtagtcaacttgcagggtttatgaat
aagcgaaatttacaggatgacctgcccctcagtggtgcagctgcacttgaagttgcgata
tttgcctcagcttctcgtctatctatcggtgcctccgaccaactctcccgcggaagtgcc
tggtatgaccttgggatatcgttgtattcctggaccatctgctctcggcatgccgctgat
gctttgcgaattcaagcaagggccattgaatgtcttactagtgcgcttcaggaagatcct
gagaacgaagtgtactggaattcattcggcagcgcccaatttttattgcgtccgatcata
gctcaacatgcttacatcaaagcactggatatcaatccaaagcgagccactacctgggtt
aatcttggccttctttatgtccactacggtgatttcgagcttgctaccaagtcgttgcac
cgaggccaagttcttgaccccgactgtactttggcctggctagggcaggcccttatagca
aaagcgaacggggataatgtttctacaagagcgctgcttgagcatgcttgtagtctgtct
gcgacattgccccaagctgattatgaattcgctttccatctgttccaagaggcgaaattg
ttgactttcgatgctctactgcccgcatacttcctcatagaacgctactgtggacgccaa
ccagatgatgcggctggacttcacctctttgctctcatctgcgaagggctcgggcacgtc
acatttggagaaaatttggtttcacgtgtcattgctatcttggaagtcgcatatgaggag
ttggaggagactgaggtggagaatcagtatatcattgccaatctaacactaggacgactg
aggctatctctcggggattatcagggagcaatttcgtcgtttgaaagtgcaatgggcctt
ttacagggagagaaccataattcagtcgaaaatcttcattaccagtcctgtcttgggtcg
ggattggctcatttcatggctaatgaatttcagattgctatctccgtctttcaagaagcc
caggtggtcacagataacatcttattgaagggcaagataaatgttcttcttgcgcaaatg
atgtgggctgcaggtgcagatgatcacaaggcaattgcgaaagtgcaactccttgagtgc
atctcgcgtgacccggagaatttatcggcaattaatacccttgcggggatggggatcctc
acgtgcgatgatagtcttgttgaagctgcccttgcagaaatattgagtcttcccgtggag
gaaaggagcaaaatggatccgcagagagacgccgactatctcctcgtccagcactacctt
ggccagaatcatatacgaaaggctttggcaattgctcaaaaaaatgtatacatggtaccc
gctgatgtaaacgcacgacaggccttggcgtccctcactcttcgagcaaaacaagctggg
tcgacactagggatcgtgggactgccgtcttgtgaggtaggagaaaggtcacgccttctc
cgcctccaggcagttgctcagttgactggtgcttcaagcagctcaaaatcgccagtacag
ttagcacagcgagcagttatgctctctccatccgatatagatggttggaaaacacttgca
tatgtccaagcatgtctgcagaagaggtga
DBGET
integrated database retrieval system
