Laccaria bicolor: LACBIDRAFT_316064
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Entry
LACBIDRAFT_316064 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lbc
Laccaria bicolor
Pathway
lbc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LACBIDRAFT_316064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_316064
03041 Spliceosome [BR:
lbc03041
]
LACBIDRAFT_316064
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
LACBIDRAFT_316064
Spliceosome [BR:
lbc03041
]
Complex B
Other components
Prp19-related factors
LACBIDRAFT_316064
Complex C
LACBIDRAFT_316064
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
Mad3_BUB1_I
TPR_2
ARM_TT21
ARM_TT21_C
NBD94
Lig_C
Motif
Other DBs
NCBI-GeneID:
6073895
NCBI-ProteinID:
XP_001878293
JGI:
316064
UniProt:
B0D3V0
LinkDB
All DBs
AA seq
998 aa
AA seq
DB search
MPSVALKRASLEDLKSHFPLTFPVPTPKSHSDLITTKEIQREEDLLRNPTSFRAWWSAIN
STREEFVALQKIEPSSTLPDEVHAILGPLASPLSRLTLQRLTYLYEAALVHFPNSFKLWK
SYLNMRSGFVLGKLVIKKRAGGKKKLPEMKDALEEETEDLEDWEESLDPVVGWEEWRSLV
ATFERALMWLPKLPRLWLMYFAIFFHPKCPPLLSHTHARRTFDRALRTLPPSLHFRIWVR
YLLWAGRKGGETTVVVYKRYLSVDPSITEGFTGLLLSSTNSAPRPLEAAKLLLSLARKAA
RGEYTSPEGKSPYQLLGDWIDVVEAYSEEVGLDADETDESNDAIAREESEAAEAAIFKPE
AVSKDGQLIRFAGPAVPVKADGTAAQPYDPDEDPSSSRRLNIENIIQKDGLAVYKDQAGR
LWTGLATYWIKRAEFDRAKKIFEQGIKSVLTIRDFSQIFDSYVEFGESLLNAMMQSLEEE
DDDSGEIMEEVDLRMKELEELTDRRPFLLNDVLIRRNPNDVLEWEKRVALWGKQDEGGKQ
DEQVANTYSKALETINPRKATNNLHRLYVNFAKFYEEGGTNGQADKDLESARKIFDKATK
VNFKLVEDLAEVWCEWAEMEIRHENYDEAIRVMQRAAAIPKNTKVNYHDHTLSSQARLFK
SLKLWSFYVDLEESIGTVESAKAVYDKILELRIANAQIIVNYAAFLEENKYFEESFKVYE
RGVELFTFPVSFEIWNIYLSKFVKRYGGTKLERARDLFEQSLEKCPPKSCKPLFLMYAQL
EEDHGLAKRSMAIYDRATQTVADADKFEMFTIYIAKATANFGLPATRPIYERALEVLPDR
QTAEMCLRFAALERKLGEIDRARAIYAHASQFCDPRINPQFWSEWNTFEIETGSEDTFRE
MLRIKRSVQAQFNTEASYLAAQTTAARQGTTKVNDDDVDSQDAMAAAEKKVAGGTKGPAF
VAATATKLALPDTTAQDGLTAAPTVNADEIHISDDEDL
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgccttcagtggcattgaaaagggcgtccttggaggacttgaaatcccactttcccctt
acatttccagttccgaccccaaaatcacactcagacctcattacaaccaaggaaatacag
cgagaagaggatctcttgcgaaacccaacatctttccgtgcatggtggtctgctatcaac
tccacgagggaggagtttgttgctttacagaaaattgaacccagttctaccctcccggac
gaagttcatgctatccttggtccactcgcttcccctctttcgcggctaactctgcaacgc
ttgacctacctgtacgaagctgccttggttcactttcccaactctttcaagctatggaaa
tcctatctcaacatgcgctcgggttttgttcttggtaaactcgtaatcaagaagagagcg
ggggggaaaaagaagttacctgaaatgaaggacgcgctggaggaagaaacagaggatttg
gaggactgggaggaatccttggatccagtcgtgggctgggaggaatggagaagcttagtc
gcaacgtttgagcgtgctttaatgtggctaccaaagctccctcgtctctggctcatgtac
tttgccattttctttcatcccaaatgccccccattactatctcacacgcatgcgcgccga
acattcgatcgagcgttgcgaactctccctccgtccctccacttccgtatctgggttcgc
tacctactatgggcaggacggaaaggcggcgaaaccactgtcgttgtctataaacgatat
ctctccgtcgatcctagtattacggaaggatttacgggccttctgctttcctcgacaaat
tctgccccacgtccactagaagctgctaaacttcttttgtctctggccagaaaagctgca
agaggagagtacacgagtccggaaggcaagagtccgtaccaacttcttggggactggatc
gacgttgtcgaggcgtattcggaggaggttggtttagatgccgacgaaactgacgaatca
aacgatgctatagcgagggaggaatctgaggctgccgaagctgcgatctttaaacccgaa
gctgtatcgaaggatggacaactcataaggtttgcaggtcccgccgttccggtgaaagct
gatggaacggctgctcagccttacgatcctgatgaagatccttcgagctcgagaaggctc
aacattgaaaatatcatccagaaagatggtttggctgtgtacaaggaccaagctggaagg
ttatggactggtcttgcgacgtactggatcaaaagagccgagtttgaccgtgcaaagaag
atcttcgagcagggtatcaagagtgtcctcacaatacgcgatttctcgcaaatctttgat
tcatatgttgagtttggagaatccctactcaacgcgatgatgcaaagtttggaggaggaa
gatgatgacagcggggaaataatggaagaagtggatcttcgaatgaaagagcttgaggag
ttgacggatcgcaggccgttcctattgaacgatgtgttaatacgtcgaaacccgaatgac
gttctggaatgggaaaaacgggttgcactgtggggcaaacaggatgaggggggtaaacag
gatgaacaggttgcaaacacatattccaaagctctggaaactatcaatccgcgaaaagcc
accaacaatctccatcgcctatacgtcaattttgcgaagttctacgaagagggaggaaca
aatggtcaggcggacaaggacctggagagtgcgcgcaagatattcgataaagccaccaag
gtaaacttcaagttggttgaagatcttgcggaggtatggtgcgaatgggcagaaatggag
attcgtcacgaaaattacgatgaggccatacgagtcatgcaacgcgcagccgcgatcccg
aaaaacacgaaagtgaattaccacgatcatacgctgtcatcccaagcacgtctattcaaa
tctctgaagctttggtcgttttatgtcgaccttgaagagtctattggtacagtcgaatca
gccaaggccgtgtacgataaaattctggaacttcgcattgccaatgcccagatcatcgtc
aactatgctgcattccttgaagaaaataagtactttgaagagagtttcaaagtatacgag
cgtggagtggaactattcacctttcctgtatcctttgaaatctggaacatctatttatca
aagtttgtaaagcgttatggtggaacgaaactcgaacgcgcccgggacctgtttgaacaa
tcactggaaaaatgcccgcccaagtcgtgtaaaccgctcttccttatgtatgcgcaactg
gaagaggaccacgggcttgctaaacgttccatggcaatctacgatcgtgctactcagaca
gtggccgatgcagacaaatttgagatgttcacaatttacatcgccaaggcgaccgccaat
ttcggtctgcccgctactcgaccaatctacgaacgagctctggaggttctgcctgatcga
caaacggccgaaatgtgtctacgattcgcagctcttgagcgcaaacttggcgaaattgac
agagctcgggccatctatgcccacgcatcgcaattttgtgacccccgcattaacccgcaa
ttctggagcgagtggaacacattcgaaattgaaactggttccgaagacaccttcagggaa
atgctgcgaatcaaaagaagtgtacaggcacaattcaatacagaggctagctacctggct
gcacagacaacggcggcgcggcaagggacgacgaaggtaaatgatgatgatgttgactca
caagacgcgatggctgctgctgagaaaaaggtggcaggcggcacgaaagggcctgcattc
gtcgctgccactgctacgaaacttgcactccctgataccacagcgcaagatggactcaca
gcagcaccgacagtcaatgcagacgagatacatatatcggacgacgaagatttataa
DBGET
integrated database retrieval system
