Laccaria bicolor: LACBIDRAFT_316322
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Entry
LACBIDRAFT_316322 CDS
T01044
Symbol
RDR16203
Name
(RefSeq) RNA-directed RNA polymerase
Organism
lbc
Laccaria bicolor
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RdRP
AAA_11
AAA_12
AAA_19
AAA_30
UvrD-helicase
ResIII
AAA_16
SLFN-g3_helicase
AAA
AAA_25
AAA_22
AAA_7
RNA_helicase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
6085433
NCBI-ProteinID:
XP_001889791
JGI:
316322
UniProt:
B0E0P9
LinkDB
All DBs
AA seq
1690 aa
AA seq
DB search
MAPTILRNNPQMDDDAWRFNVPHESLLPPKRARQGITYGNVVSFSTDAITLRIEQFPSNR
VIHSDDPSKFILLSFGKEFRFPDHPPRVSGEYIARLLKAGFFLNDIQYRFYHHSNSQLRG
RSCFLRQANNDKELDDRIYQLGDFGRIMNIAKRAKRIGLLFSSAQIDYRLDPKYIADIPD
IQDGDELFSDGCGLISKRLSIALSKAKRITFRNVRYTPTVFQIRYLGYKGVLMLHPQLDA
EGKHLAQFRKSMKKFTTTTDHTFSVVGHSRPYTFGRLNNDIIVLLSCLGVTNEKLLNKQD
EYFQWLRNATEDPTAAVDFLSCIDQYPLAGKVLLNGINDPDVAKEIRRLQLGEIARYTDE
REKFKSRMIIRESRRLFGVCDPFQVLKEGEVHIRIMASRKGPSTPIHGDVLIVRNPCLHP
GDCLKLRAVHNDKLSHLVDCLVFASVARPGHHAAPSMSSGGDLDGDEFLVCWDKDLVPPR
ISESYDYPGNKERISKKVTREDLAVHFASYNAAGLARVSALHNKWARYSPQGALSVQCQE
LNALHSQSVDGAGIKIPDRLTKPPEPTEPFIIDLLEQAARKFATEFVQSQTNLASIPSLD
AEEGQKLISQLFKSTQHAVTEYELFELAYRLSQKYRFDLRPYLGQIDWSAITAMQKHAVS
TTLSLSSIDYPYMWNSLIKSDILMPQDLYSRSLSSPFSIQRLYSSKENGLTTFFEYLRMA
TQDYTRKLLVIQTERRFSVGIFMRGNIPWDEEPEVNDNVVVCSFLPDSSSTIAHQHPCSA
GYRLHLSDSRMELYNRQRSDTFVFINRQLGTEVVASIALQKISKTVQKQLGRVNRSPLIG
IELHVVSNHDRVAHQLFDLWFQHVPTEEYVRRFQRQSAPYRMNDLKDVDWSKEPDWLKSA
FYPLRDPQGLPSSKKLRQHTQETMDAVLARRMLPELDQILDFGLMYHAEDEVLLVFHYVL
LLKPFPEGLAVKWIDRYPPLVFTVLKVYPPDDETLKLPPETEQMTRTIVQAIIRSANDLR
IASLVALEKIAGSIALLPIDEYIEMLMLAALSVRSSQLVQEVLLVMNDIRLAHCPQTPVL
EYGHKHALGVVFDRAEEAADECPCNEDGKPRKQRNPPSQTNLTFVADDTLHVMATLRVDA
KTAIRLHSHVRLQATSKAENRWIDAPVLDGLVVQAMKGELKIKLLQPAPPETERMDWVVF
NAGSIATSRAMLDALLRLLEQKQAACLFYNFITGDEEEAPEGEQVPSVEVIPPGDDSGLN
ESQRMAVQSWAAPLSLIWGPPGTGKTTVVVDILRSIIKTYYPATPKILMTASTHNAVDNV
LERFVKINEEDQLLREEQILRVATDQSKVNQDLQHFTIDARIGGDMNQNSRLVKQAQERV
ERSVLVFTTCAGAGLGILRKVDFDIAIIDEASQITEPCALIPLVKGIKRAMMVGDHVQLR
PTVKNMAKVVRFDISLLERLYSQPNIPEGMVKTMLDVQYRSPKELNAFPSKEFYEGRLKT
SDANSAGSLNALKKSSFPWPIGDGGEVIPAVFIQCSSEEDLGDRSKSNEGQVDVVRHVLK
LLSSTPKNPTSEEEDKSEEKDLKVTVLSPYTKQIQTLRRRLPSSITSSTIDSFQGRESDI
IIFSTVRCNVDGDVGFLDDPRRLNVMWTRARLALIIVGDRATLSANQLWKRALEACTEVE
IVLEEPTTTG
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaccatccttcggaataatccccaaatggacgatgatgcctggcgattcaac
gtcccacatgagtctcttctgccaccaaaacgcgccaggcagggcattacatacggcaat
gttgtctccttctccactgatgctattaccctacgcatcgagcaatttccatcaaatcgc
gtcatccactccgatgacccatccaaattcatcttgctctcctttggaaaggaattccgg
tttccagatcatccaccacgagtttcgggagagtacattgctcgattgctcaaggcgggg
ttcttcttgaacgatatacaatatcgattttatcatcatagcaacagtcaactgcgcgga
cgctcctgctttttgaggcaagctaataacgacaaagaattggacgatagaatttaccag
ttaggagatttcgggaggattatgaacatcgccaaacgcgcaaaaaggattggcctgttg
ttctcgtctgcccagatcgactatcgtctcgacccaaagtatatagcggatattccggac
atacaagatggggacgagctcttctccgatggatgtggactgatctcgaagaggctctcc
attgctctgagcaaagctaagcgaatcacctttcggaatgttaggtacacacccacggtt
ttccagataagatacttgggatacaaaggtgttctgatgttgcacccccaacttgacgcc
gagggaaaacatctcgcccagtttcgcaaaagcatgaagaagttcacaacgaccacggac
cacacattctctgtcgttgggcactctaggccatacacgttcggacggctgaataacgac
atcatcgtccttctctcttgtcttggggtcaccaatgaaaagctgctcaacaaacaagac
gaatattttcagtggttgaggaacgcgacagaagaccccactgctgccgtcgactttctc
tcctgcattgatcagtatcctctagctgggaaggttctgctaaatgggatcaacgaccct
gacgtggcaaaggaaatccggcgcctgcagctaggcgagatagccagatatacggacgaa
cgcgaaaagtttaagtctcggatgatcatccgcgaatcacgtcgtctgtttggggtctgt
gatccgtttcaagtcctcaaggaaggcgaagtccatattcggattatggcttctcgaaag
ggaccatccactccgattcacggagacgttctcatcgtcaggaacccatgtctccatccc
ggtgattgcttgaaactccgagcggtacataatgacaagctttctcaccttgttgactgc
cttgtttttgcgtctgtcgctcgccctggtcatcatgcagcaccttcaatgagtagtggc
ggtgaccttgacggcgacgagttccttgtctgttgggataaggatcttgtacctccccgt
atctcggagtcttacgattatcccgggaataaagagcgcatcagcaagaaagtaacaagg
gaagatctagctgtgcattttgcctcgtataatgcggctggcctagcaagagtctcggcc
cttcacaacaaatgggcccgttacagcccacaaggggcgctatctgtccaatgccaggaa
ttgaacgcgctacattcgcagtccgtggacggcgcaggcatcaagatccccgatcggtta
acaaaacccccagagccaactgaaccattcatcatcgaccttttggagcaagctgcgcgg
aaattcgccaccgagttcgtgcaatcgcaaaccaacctcgcctcaattccttctctcgat
gccgaagaaggccagaaactaatatcccaactctttaaaagcactcaacatgcggtcact
gaatatgagcttttcgagcttgcttaccgcctttcccaaaagtatcgattcgaccttcgt
ccctatcttgggcagattgactggtcggccattacggcgatgcagaaacatgccgttagt
acgacgctgtccctctcgtctattgattatccgtacatgtggaattccctgatcaagtct
gatatcttgatgcctcaagacctgtattcgcggtctcttagctctcccttttccatacaa
cgtttatattcgtcgaaggaaaatgggctgactacattctttgaatacctgcgcatggct
acgcaagattacacgaggaaactgctcgtcatccaaacagagcgacgattctctgtcggt
atctttatgagggggaacatcccttgggatgaagaacccgaagtgaacgataacgttgtc
gtctgctctttcttgccggactcctcatccacaatcgctcaccaacacccatgctctgct
gggtacaggcttcacttgagcgattcaagaatggaactttacaatagacagagaagcgat
acgttcgtcttcatcaatcgccaactagggaccgaagtcgtcgcgagcattgcgttgcaa
aaaatttcaaagacagttcaaaagcaattggggagggtcaacagatcacctctcatcggt
atagaattgcatgtggtatccaatcatgaccgtgtagcccaccaattattcgatctgtgg
tttcaacatgtcccaactgaagaatatgtgcgccgatttcagcgccagtcggcaccttac
cgcatgaatgatctcaaggatgtcgactggtcgaaagaaccagactggttgaaatctgcg
ttctatcccctaagggatcctcaaggtcttccttcctcgaaaaagctcaggcaacacact
caggaaaccatggacgccgttcttgccaggagaatgcttccagagcttgatcagattctc
gatttcgggttgatgtaccacgccgaagacgaagtattactggtcttccactacgtcctc
ttactcaagcctttccctgaagggttggctgtcaagtggatcgatagataccctccgttg
gttttcacggtcttgaaggtatatccccccgacgacgaaaccctcaaactaccgcccgaa
accgaacaaatgacgcgtactatcgtgcaggctatcatccgctcagctaatgacctccgc
atcgcttccctcgtcgctttggaaaaaatagcagggtccatcgcgctgttaccgatagac
gaatacattgagatgctcatgttggctgcgttgtctgtgcgctcgtcacagcttgttcaa
gaggttttgctagtcatgaacgatatccgactcgctcattgtccacaaacaccggtattg
gaatacggacacaaacatgctctaggagtagtctttgaccgagcagaagaggcagcggac
gaatgcccctgcaacgaggatgggaaaccgcggaaacagagaaacccaccttctcagact
aacctcacgttcgtcgcggatgatactttgcatgtgatggcgactttacgagtcgatgcg
aagacggctattagactgcattctcatgtccgcttacaagcgacgtcgaaggctgagaat
cggtggattgacgcgcctgttttggatgggctcgttgttcaggctatgaagggcgagttg
aagatcaaacttcttcagcctgctccccccgaaacggagcgtatggactgggttgtgttc
aacgcaggaagcatagcaacttcgagagctatgttggacgcactgttacggctcctggaa
caaaaacaagctgcgtgcttgttttacaactttatcacgggtgacgaggaggaagcgccg
gagggcgaacaggtcccttccgttgaggtgatacctccaggtgatgattcaggtctcaat
gagagccagaggatggctgtacaatcttgggctgcgcctttatcgttgatctggggacct
cccggcaccggaaagacaacagtggtcgtcgacattttgagaagcataatcaagacatat
tatcctgcaacacccaaaattttgatgactgcgtctacgcataatgccgtcgacaacgtt
ctagaacggttcgtaaaaataaacgaggaagaccaacttctccgcgaggaacaaatcctg
cgcgtagcaacggaccaatcgaaagtgaaccaagacctgcagcacttcaccatcgacgcg
cggatcgggggggatatgaatcagaatagtaggctggtgaagcaggcacaggagagggtt
gagaggtcggttttggtgtttactacgtgcgctggcgctggtctggggatattgagaaag
gtggattttgatattgctattatcgacgaggcgtctcagataacggagccgtgcgctttg
atacctctcgtgaaggggattaagagggcgatgatggttggagatcacgtccagcttcgg
ccaacagtcaaaaacatggccaaagtcgtccgattcgacatttccctcctggaacgtctc
tactcccagcccaacatcccggaggggatggtcaagacgatgctagacgtccagtaccgc
tctccaaaagaacttaatgcgttcccctccaaggagttctacgaaggccgattgaagacg
agcgacgcgaacagcgcagggtctttgaacgcgctcaagaagtcctcgtttccttggccc
attggcgacggcggcgaagtcatcccagctgtgtttatacagtgctcttcggaagaggat
ttgggcgatcggtcgaagagcaacgaaggccaggtcgacgttgtccgccatgtgttgaag
ctcttgagtagtacccccaagaatccgacgtcggaggaggaagataagtcggaggagaag
gatttgaaagtcaccgttttgtctccgtacacgaaacaaatccagacactacgccggcgc
ttaccttcatccatcacctcgtccaccattgactcattccagggacgggagagcgatatc
atcattttctcgactgtgcggtgtaatgtggatggcgatgttgggtttctggacgatccg
agaaggttgaacgttatgtggacgcgtgcaaggcttgcgttgataattgttggggatagg
gcgacccttagtgcgaatcagctctggaaacgcgctttggaggcttgtacggaggttgaa
attgtattggaagagccgactacgacggggtag
DBGET
integrated database retrieval system