Leptopilina boulardi: 127289276
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Entry
127289276 CDS
T08910
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lbd
Leptopilina boulardi
Pathway
lbd03013
Nucleocytoplasmic transport
lbd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127289276
03015 mRNA surveillance pathway
127289276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbd03019
]
127289276
Enzymes [BR:
lbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127289276
5.6.2.5 RNA 5'-3' helicase
127289276
Messenger RNA biogenesis [BR:
lbd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127289276
mRNA cycle factors
Common to processing body (P body) and stress granule
127289276
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
127289276
NCBI-ProteinID:
XP_051173065
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDAATQGQQS
QPVQVNGTSVVSSLDLKISGAAQTLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVV
MCNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLG
FIPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRAR
QISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEAD
YDKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWS
GIGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALKKFAVDDT
SVSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPG
TGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSP
VSFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICC
TCVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKI
DFPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITP
YEGQRAYLVQYMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLND
PRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAK
PKKLVNASNPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGNQNHNPYYQRNVTLDIFSR
THDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGVTPV
KSKAGARIGKLSQTEQNTQPYSQPGLPLTQGNTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggacctagtagtcaaaccctcaccttcctcgacacagaggaa
acagatttaattggagcggatacacaaggcagcgaatttgacttcactgattttacatta
ccctcgccaagtcaaactcaagcttctcagcatgatgctgcaacccagggccaacaaagt
cagccagtgcaggttaatggaaccagtgttgtatcatctttggaccttaagatctctggg
gcagcacaaacactcgcggaattacaatttgaagaagaagaggaagaggcatattacaat
cgcgatttaccagaacatgcgtgtaaatattgtggtattcatgaagcctcgtgtgtcgtc
atgtgcaatgtttgtcgcaaatggttttgcaacggtcgaggaaatacgtcaggctcgcac
attatcaatcatcttgtccgagcaaagcacaaggaagtcacattgcacagagatggacct
ttgggagaaacagttcttgaatgttattcatgtgcagtgagaaatgtcttcgttcttgga
tttattcctgcaaaagcagattcagttgttgttcttctttgtcgacaaccatgtgctgca
caaagttctctaaaggatatgaattgggatcaggaacaatggaaaccactaatagaagat
cgtagttttctcgcgtggttagtgaaaatcccatcagaacaagagcaattgcgagcgaga
caaatatcagctcaacaaataaataaacttgaggaattgtggcgcgataatgttgacgca
acatttcaggatctcgagaaaccaggtgttgacgaagaaccacaacaagttttattaaga
tacgaggatggctatcaatatcaaaatatatttggtccattggtgaaattagaggcggat
tatgataaacgtttaaaagaatcacaaacacaggagaatatcgaggtacgatgggatgtt
ggtttaaataaaaagacaattgcctattttatgcttgcaaaaacggacggtgatatgaaa
cttatgcatggcgatgaattgcgacttcgttaccttggtgaattgcacaaaccctggtct
ggaattggacatgtgattaaaatccctgataattatggcgaagaagttggtattgaattg
aaaaataattcgggagcgcctacagagtgtgtcagcaattttgtcgttgattttatttgg
aagagtacgagtttcgatcgaatgcaattggcgctcaaaaaattcgccgtcgacgacact
tcggtatcggcttacatttatcatcgactattgggtcatgaagttgaggaagttttattc
cgttgccatttaccaaaacattttagtgcaccaaatttaccagacctaaatcgttctcaa
gtctatgctgtgaaacatgccgttcaaaggccattgtccttaattcaaggtcctccgggc
acaggaaaaacagtgacaagtgcaacaattgtttatcaacttgtgaaacaaaatggtggt
cccgtacttgtttgtgctccttcaaacacagctgtcgatcaattgactgaaaaaatacat
aaatcaaatcttaaggttgtacgtctttgtgccaaatctcgtgaggcaattgattcgcca
gtgagctttttggctttacacaatcaaattaaaaatatggaaacaaacacggaactacaa
aaacttcaacaattgaaagatgaaactggtgaattgtcaagtgtcgatgaaaaacgttac
agactattgaaaaaagccgccgaaaaagaattactcgaagctgctgatgttatttgttgt
acttgcgtgggtgctggtgatccaagacttcatagactcaaatttcattcaattctcatt
gacgagagtatgcaagcaacagaacccgaatgtatggttccagtggtattgggggcaaaa
caattgatcctcgtcggtgatcattgtcaattgggaccagttgtaatgtgtaaaaaagca
gcaagagccggtctttcacaatcattattcgaacgtctcgtcgttcttggaattcgacca
tttcgacttgaagttcaatacagaatgcatcctgatttatcgcgattcccatcaaatttc
ttttacgagggttcactgcaaaatggtgtatgtgcggatgaaagaaaacttctcaaaatt
gatttcccctggccagcgcccgataaaccaatgtttttctatgtaacacaaggacaagaa
gaaattgctggcagtggaacgtcatatttaaatcgtaccgaagcgtcaaatgttgagaaa
ataacaacacgatttttacgttgtggagtgaaaccagaacaaattggcgtcataacaccg
tacgagggacaaagagcatatttagttcaatacatgcaatatcaaggctcattgcatgca
aaactctatcaagaaattgaagtcgctagcgttgatgcctttcaaggaagagaaaaagac
attatcatcatgtcatgtgtaagatcaaatgaacatcaaggaattggtttcttaaatgat
ccaagaagattaaatgttgccttgacaagagcaaaatacggtattattatcgttggaaat
ccaaaagttctttccaaacaaccactttggaatcatttattaagtttttataaggaacaa
aaagttcttgtcgaaggtccattgaataatttaaaagaatcaatgatacaatttgcaaaa
ccgaagaaacttgttaatgcatcaaatcccggatcacattttatgtcgacatcaatgtat
gacgcaagagaagccctaataccgggatcggtttatgatagatccggagcacaagtcaat
ggcaatcaaaatcataatccatattatcagaggaatgtgactttagatattttcagtaga
acgcacgatacaattagttatattagtcctgagagagcacaggcggcaatgaataatgtt
ccagttccggtgggaatgttcatgaatatggcacatgtgccaccgagattttataatcaa
catcaacaagcacttcaagcaaggcaaaatcaacgtaatcgacgtggtgtcacgcctgtt
aagagtaaagctggagcacgtattggaaagctcagtcaaactgaacagaatacacaaccg
tacagtcagccgggcttgccattgacgcaaggaaatacacaaggaatgtcacaacccggt
tttagtctctcacagccgggactctctcaagctgaactctcgcaggactcattcgcagtt
ggtgagtttcaatcgcaaatggacggactattatcccaggattcgacttatcagggcgat
agaagtggtttttatcaatcaggccagtcgcaagccgggggtcaattctcccagccctat
tga
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integrated database retrieval system
