Nicoliella spurrieriana: MOO44_02460
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Entry
MOO44_02460 CDS
T08428
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lbe
Nicoliella spurrieriana
Pathway
lbe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MOO44_02460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbe03400
]
MOO44_02460 (mfd)
Enzymes [BR:
lbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MOO44_02460 (mfd)
DNA repair and recombination proteins [BR:
lbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MOO44_02460 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
AAA_16
MFD_D3
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
IstB_IS21
CdvA
Motif
Other DBs
NCBI-ProteinID:
UQS87048
UniProt:
A0A976RSH8
LinkDB
All DBs
Position
complement(172579..176103)
Genome browser
AA seq
1174 aa
AA seq
DB search
MKLSQFFTSIPQFQTITDNLKPATRQLITGMSGSAKTLLLSILLEQTKQPILLVVDNLHH
MTQVADDFTNLLSENQVFEFPAEELIAAEAATSSPQYRAQRVRALHALQTKQAAVVVTSM
SGVRRLLPTPHDFAENQFQITVGDEIDLGDVKTALFRLGYRRVKLVAAPGEFAIRGSIID
IYPLNSEYPIRVDLFDTEVDSLRYFDVSTQSSVQNMDSFKVLPATDFILNADQLQNGPQQ
LQTHLNRSVGQIKDAKVAEAMKDYLQPIIDEFKAGIIDSQLILFANYLFDRSTSIFDYVP
SDGIIVCDDYHRLLESEQELLGDEQQWAADKLLNGEIFSDQQFGHDFKTVFKAANQPELM
FARFQRGLNGLRLTKLVEIKVQPMQKFYGQIPLLKTEMNRWQKQNETVVIMVRDKVQMDK
LANTMDDFEINVTQTDWDHLIQNQVQLIPERLNNGFELPFANLALITESEMFNHVTKRLA
KRQTFSNAERIKSYVDLKPGDYVVHVNHGIGRYEGMKTMEVDGKHQDYMTITYRDNAQLF
IPVTQLNLIQKYVSAEDKRPRINKLGGSEWAKTKSKVASKIEDIADDLIDLYAKRSTATG
FAFPPDDVYQEQFDDAFPYPETPDQIKSINEIKVDMEKPHPMDRLLVGDVGYGKTEVALR
AAFKAIEAGKQVAFLVPTTVLAHQHYETILKRFDGFPVSAAVLSRFRTPKQIKTTIKGLE
DESIDIVVGTHRLLSKDVHFKDLGLLIVDEEQRFGVKHKERIKEMRSDVDVLTLTATPIP
RTLNMSMMGVRDLSVIETPPTNRYPIQTYVLEENAGTIKDGIHRELDRGGQVFYLHNRVE
DIEKTVGMLEQLVPDARIAYIHGKMSENQLETVLYDFVNGDYDVLVTTTIIETGVDIPNA
NTLFVENSDHMGLSQLYQLRGRIGRSNRIAYAYFMYKPNKVLTEVSENRLDAIRDFTALG
SGFKIAMRDLSLRGAGNLLGKQQHGFVDSVGYDLYTEMLSDAVAQKRGTSRTQRVDSTIE
LDVEAYLPDDYISDHQQKIEIYKRIRQLENEDQYTEIQGDLIDRFGDYPVAVANLLLIGR
MKMLADQALIKKISNDAKAIIITMSKLGTTVFDSKDILRAIAQTKFRSTLEVVNDRIQIK
LIIQPTMQQAVWLNELMQLIDSLVHRRMEIEDEK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcagtcagttttttacttctattccgcagtttcaaacaattactgacaattta
aaaccggccacccggcaattgattactggaatgtctggctcagctaaaacattattacta
tcaattttacttgagcaaactaagcagccaattttattggtggttgataatttgcatcac
atgacccaggtagccgatgattttacgaatctactatctgagaatcaagtatttgaattt
ccggctgaggaattgattgcagccgaagcagcgaccagttcaccgcaataccgagcgcaa
cgggtgcgggccttgcatgcattacaaactaagcaagcggccgtagttgtgacctcaatg
tctggggtccggagactgttgccgacgccccatgattttgccgaaaatcagtttcaaatc
accgttggagatgaaattgacctaggggatgttaagacggcactctttcgtctagggtat
cgacgggtgaaactagtggccgcccccggtgaatttgcaattcggggatcgatcattgat
atttatccacttaattcggaatatccgattcgagttgatctatttgataccgaggttgat
tcactgcgttactttgatgtctccacgcaaagcagtgtgcaaaatatggatagctttaag
gtcctgccagccaccgattttattttgaatgcggaccagttgcaaaacggcccgcaacaa
ctgcagacgcatttgaaccgttcggttgggcagattaaggatgccaaagttgcggaagcc
atgaaggattacttacagccgattattgatgaatttaaggccggaatcattgatagccag
ttgattttatttgctaactacctctttgatcgatccacctccatttttgactacgtgcct
tccgatggtatcatcgtctgtgacgactatcatcggctattagaatcggaacaagagttg
ttaggggacgagcagcaatgggcggccgataaactattaaatggcgaaatttttagtgac
cagcaatttggtcatgattttaaaacggtctttaaggctgctaaccaaccggaattaatg
ttcgcgcgtttccaacggggactaaatggattgcggttgactaagctggttgaaattaag
gtccaaccgatgcagaaattttacgggcagattccgctattaaaaaccgaaatgaaccgt
tggcaaaagcaaaatgaaaccgttgtgatcatggttcgtgataaggtccagatggataag
ctggcaaacacgatggatgactttgaaatcaatgtgacccagaccgattgggaccacctg
attcaaaatcaggtccaattgatcccagaacggttgaacaacggcttcgaattaccgttt
gcaaacttggcactaattaccgaatcagaaatgtttaaccacgtgacgaagcggcttgca
aagcggcagaccttttcaaatgctgagcgaatcaagagctacgtggatctaaagcccggc
gactatgtcgttcacgtaaaccacggaattggtcgctatgaaggcatgaagacaatggaa
gttgatggtaagcaccaagattacatgacgattacctaccgcgataacgcacaactgttc
atcccggtgacccagttaaatctaattcaaaagtacgtttcggctgaggataagcggccc
cgaattaacaaactggggggcagtgaatgggctaagaccaagagtaaggtcgcaagtaag
attgaagacattgccgatgatttgatcgacctctatgcaaaacggtcaaccgctaccggg
tttgcgttcccgccagatgatgtctatcaagaacaatttgacgatgcctttccgtacccc
gaaactcccgatcaaattaagagcatcaatgaaattaaggttgatatggaaaagccccac
ccgatggaccggctattggtcggtgatgtcgggtacgggaaaaccgaagtagcgctgcga
gccgcgtttaaggcgattgaggccggcaaacaggtcgcttttttagtgccaacaaccgtt
ttggcacaccagcattacgagacgattttaaaacgcttcgatggctttccggtttcagcg
gcagtcctgtctagatttagaacccctaaacagattaaaacgacgattaaggggttagag
gatgaatcaatcgatatcgtggtggggacccaccggctcttatccaaggacgttcacttt
aaggacttagggctgttgatcgttgatgaagagcaacgttttggggttaagcataaggaa
cgaattaaggaaatgcgttccgacgttgatgtattaacgctgactgccaccccgattccc
cgaaccttaaatatgtcgatgatgggggtccgggacctatcagtaattgagacgcccccg
accaaccgctacccaattcaaacctacgtcctagaggagaacgccgggacgattaaggat
ggaattcaccgggagttagatcgtggggggcaggttttttacctgcataaccgggtcgaa
gatattgaaaaaacggtcgggatgttagaacaactagtcccggatgctagaattgcgtac
atccacggtaaaatgagtgaaaatcagcttgagacggtcttatatgactttgtgaacggt
gattatgatgtgttagtaacgactacgatcattgaaaccggggtggatattccgaatgcc
aatacgttgttcgttgaaaattcggaccacatggggctgtcccaactataccaattacgg
ggccgaattgggcggagcaatcggattgcatatgcctactttatgtataaacccaacaag
gtcttgaccgaagtcagcgaaaatcgcttagatgcaattcgtgatttcaccgccctgggg
tccgggtttaaaattgcgatgcgtgacctctcgttacggggcgccggaaatttgttggga
aagcaacaacacggcttcgttgattcagttggttacgacctctacaccgaaatgctatca
gatgcggtggcgcaaaagcgggggactagccggacccaaagagtcgattcgaccattgaa
ctggatgttgaagcctaccttccagacgattacattagtgaccatcaacaaaaaattgaa
atttataaacggattcggcaattggaaaatgaagatcaatacactgagattcagggtgat
ttgatcgaccgctttggtgactatccagtcgcagtggcgaacttattgttaatcggacgg
atgaagatgttagctgaccaggcgttgattaaaaaaattagtaacgatgctaaggccatt
atcattacgatgtctaaattaggaacaactgtttttgattccaaggatattttaagggca
attgcgcaaaccaagtttagatcgacgttagaagtggtgaatgatcgaatccaaattaag
ttgatcattcaaccaaccatgcaacaagcggtctggttaaatgaattaatgcaactaatt
gattcgttggtccaccgtcggatggagattgaagatgaaaagtaa
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