Lodderomyces beijingensis: 92206525
Help
Entry
92206525 CDS
T10315
Symbol
LODBEIA_P13290
Name
(RefSeq) uncharacterized protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
lbg Lodderomyces beijingensis
Pathway
lbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
92206525 (LODBEIA_P13290)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbg03019
]
92206525 (LODBEIA_P13290)
Enzymes [BR:
lbg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
92206525 (LODBEIA_P13290)
Messenger RNA biogenesis [BR:
lbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
92206525 (LODBEIA_P13290)
mRNA degradation factors
3'-5' decay
Pan complex
92206525 (LODBEIA_P13290)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Motif
Other DBs
NCBI-GeneID:
92206525
NCBI-ProteinID:
XP_066828267
LinkDB
All DBs
Position
2:379301..382828
Genome browser
AA seq
1175 aa
AA seq
DB search
MEGWNQVARIPLVSNKTTTATTTGNSNFPPASITSLQFDTVQNLIWCGDSSGYTRSLSIS
ESASSYNIQLFPHTKFQTSTLGQPIQQVLSHKDGILSLSQDQVSFYNRRGLPKSAFDSEF
FTENGDLFKNLNSMSFNCNSFNDVVVGTDSSLLHFDLNKPQIVSKFDHEGKVAIVKESPK
LLALASSTGSLELFDPSSNTSLKTFSAHNGYMSDMDVKGTYIATCGYSIKPKRYHFHQSP
EYSPDPLVNIFDIRTMKAIAPVAFPAGVSSVKFHPKLPNILIITSGFGLIQFVDIFDQTN
VNVYHADLSLSPQQQQQQQQQQQQSQQSQQSQTQPEQQQLANGKQPYLSDLQISENGDFF
MFNDGFSNLHLWSITNSGTLSKNFVNFPQAVERPDVADLSDVFIDIDDEETPLSTVGMPY
YKDLLLSNWPIDLKFVKEKSRLPEPIDPELLAQAEKSPFGTFIKYNSMKYGLGIVEQPYY
SLTQPVDTQIPKFLSEKGTKEKQRTKSIQALEDSIFQSQNDEKIPNCYARLQIQYSKFGV
KDFDFGFYNRSGEYCGLENHSDNSYINSLLQIYRFQASFYNQIVHSLATEWLPNDSDVIE
RNPECSSILNELAYLFDMMHKAKAHNVKTSNFSQVMNHDRNASKLINLNEMMNLNSQEVR
ELILSFNNYLLTRLRQDFTLQFNQQFNLTELTYEIEIRGKGHSCPIFDKQSGTMLSLELI
TPPTNMLNKMSILINPNLHQLQTDQPNLANVRRNLNILTYLDYSMNQCKTIPCTQHQHAH
PHTLEIKTSITKLPPVLVLNVNLTNEEFKIINNLKQWLVPEFYAVRANNAHNSGYSFKPT
MPMAGEFIHYELLGFVCEISHQIDTSRTGGHNLVSFVKINDVWIFFNDYLVIPIPKEEVF
NLTYDWKKPVIVIYQESSRKNEPFNYITHFKGDDSILYRDHFAGAIREGHKKKYTLLTRQ
EAPHPGSLVAIDAEFVTLKPEQLEISYTGSKKLIKPKDLSLARVSLLRGDDDNPLFGQAF
IDDYIVHTSHIYDYTTSFSGIEAEDLDFHKSSKNLTTLQTSYRKLWLLLNLGVVFVGHGL
YTDFRTINLQVPAEQIRDTAEFYYKESFKRKLSLKFLAYVMLKEKVQKGNHDSIEDARCA
LMLYKKYVEATAKGEFENKLDFVYKEGQRLLYRVP
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggaagggtggaatcaggtggctcgaataccattggtgagcaataaaactactactgcc
accaccacaggcaacagcaatttccctccagcttcaatcacatcgctacaatttgacaca
gttcaaaatctcatttggtgtggagattccagtggctatactagatcgttgtcaataagc
gaatcggcctcgagttacaacatccaactatttccccacaccaaatttcaaactagcaca
ctagggcaaccaatacaacaagtcctatcgcataaggatggcatattatcactactgcag
gatcaagtttcattttacaacagaagaggcttaccgaaatctgcttttgactccgagttt
tttaccgagaatggcgatttgtttaagaatttaaactccatgtccttcaattgcaactcg
ttcaatgacgtggttgttggaacagattcatctttactccactttgacctcaacaagccc
caaatcgtgtccaagtttgaccacgaggggaaagtggccattgtcaaagaatctcccaaa
ttgctagcattggcaagcagcaccggctcgcttgaactatttgacccaagttcaaacacg
tcgttaaagacattttcagcccacaacggttacatgtcggacatggacgtcaagggaact
tatattgcaacttgcggatactcgatcaaacccaagaggtaccatttccaccagtcgcct
gaatactcgccagatccattggtcaatattttcgatatacgaaccatgaaggcaattgca
ccagttgcatttcctgccggggtgtcctcggttaaattccaccctaaactaccaaacatt
ttaatcatcacctcgggttttggattgatccaatttgtggatatatttgaccaaaccaat
gtcaatgtttatcacgcggatttgtctttaagtccgcaacaacaacaacaacaacagcag
cagcaacaacaatcacagcaatcacaacaatcacaaacacaaccagaacagcagcaactt
gcaaatggcaaacagccttacctatcagaccttcaaatcagcgaaaatggcgatttcttc
atgttcaacgatggattctcgaatttgcacttgtggtcaatcacaaactcggggacattg
agcaagaattttgtcaactttcctcaagctgttgaaagaccagatgttgccgatctctca
gacgtgtttattgacattgacgatgaagaaacaccgctctcgactgtggggatgccctac
tataaagacctcctattgtcgaattggccaatcgatctcaaatttgtcaaggaaaaatca
cgtttgcccgagcccatcgatccagagttgctagcacaagccgaaaaaagcccgtttgga
acttttataaagtacaattccatgaagtacggccttggaatcgtggaacagccgtactat
tcccttacccagccggtggacactcaaatcccaaaattccttagcgaaaagggtaccaag
gaaaaacagcgaacgaaatccattcaggcccttgaagatagtatatttcaatcgcaaaac
gatgagaaaatccccaattgctacgcaagattgcaaatccaatactccaagtttggcgtc
aaggatttcgatttcgggttttacaatagaagcggggagtattgcggattggagaatcat
agcgacaactcgtacatcaactcattattgcaaatataccggttccaagcatccttctac
aaccaaatagtccactccttggcgactgaatggctaccaaacgactcggacgtgattgaa
agaaaccccgagtgctcatcgattttaaatgaattggcatatctattcgacatgatgcat
aaagccaaagcacataatgtcaagacttctaatttcagtcaagtaatgaatcacgacaga
aatgcgtcaaaactaattaatctcaatgaaatgatgaatttaaactcacaagaagtgaga
gagttgatcttgtcttttaacaattatttgctaacacgattgcggcaagatttcacactc
cagtttaaccagcaattcaacttgacagagttgacctacgagattgaaatcaggggaaaa
ggtcactcgtgtccgatatttgacaaacagtcaggcacgatgctctctttggaattgata
accccaccaacaaacatgttgaacaaaatgagtatactcataaatcccaacctacatcaa
cttcaaaccgaccagcctaaccttgcaaacgtgcgtagaaacttgaacatcttgacctac
ttggactattcaatgaaccaatgcaagactataccttgcacgcagcaccaacacgcgcat
ccgcacacgttggaaataaaaaccagtataacaaagctaccgccagtgcttgtgctcaac
gtgaacctcacaaacgaagaatttaaaatcatcaacaatctcaagcaatggctagtgcca
gaattttacgccgtgcgagcaaacaacgctcacaatagcggttactccttcaagccaacc
atgccgatggcaggcgagtttatacattacgagctcttggggttcgtgtgcgagataagt
caccagattgacacatcgagaaccggtggccacaacttggtctcgtttgtcaagatcaat
gatgtgtggatcttctttaatgactacttggtgattccaatcccaaaggaggaagttttc
aacctcacgtacgattggaagaaacctgttattgttatttaccaagaatcgtcgaggaaa
aatgagccgttcaactacatcacccactttaaaggcgatgattcgatcctttatagagac
cattttgcaggagcgatacgagaaggacataagaagaaatatactttactaactaggcaa
gaagctccgcatccggggtcgctagttgcaatagatgccgagtttgtcactttgaagccg
gaacaattggaaatcagctacacgggaagcaagaaactaatcaaaccaaaggacttgtcg
ctcgcgcgggtttcgctacttcgcggagacgacgacaatccactctttggccaagcattc
attgacgattacattgtccacacgtcccacatctatgactacacgacaagcttcagtggt
atcgaagccgaggacttggatttccacaagtcgagtaaaaacttgaccacgctacaaaca
tcataccggaaactctggcttttgctcaacttgggagtggtgtttgtcgggcatggcctt
tacacggatttcagaaccatcaatttgcaagtgccggccgagcagatacgagacacggca
gagttctactacaaggagagctttaaaagaaaattgagtctcaaattcttggcctatgtc
atgttgaaggagaaagtgcaaaagggcaatcatgactccatcgaggacgcgagatgtgcc
ttgatgttgtataaaaagtatgttgaagccactgcaaagggcgagtttgaaaacaagttg
gatttcgtttacaaggaagggcaaaggctactttatagagttccataa
DBGET
integrated database retrieval system
