Lodderomyces beijingensis: 92206995
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Entry
92206995 CDS
T10315
Symbol
LODBEIA_P17990
Name
(RefSeq) uncharacterized protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lbg Lodderomyces beijingensis
Pathway
lbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
92206995 (LODBEIA_P17990)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbg03019
]
92206995 (LODBEIA_P17990)
Enzymes [BR:
lbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
92206995 (LODBEIA_P17990)
Messenger RNA biogenesis [BR:
lbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
92206995 (LODBEIA_P17990)
mRNA degradation factors
3'-5' decay
Ski complex
92206995 (LODBEIA_P17990)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Ski2_beta-barrel
MTR4_beta-barrel
Helicase_C
ResIII
DEXQc_Suv3
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
92206995
NCBI-ProteinID:
XP_066828737
UniProt:
A0ABP0ZMS6
LinkDB
All DBs
Position
2:1564509..1568306
Genome browser
AA seq
1265 aa
AA seq
DB search
MIIEEIGNDFVDTLSVDPQTQSAYKKREPSEDEVNQQLVDDLLTPNAELSWELLDLIQEK
PQVDRDRVIDRLVINPGSLNRTKFRFKRTGIHGDISGYQEEVDLKKVNSSASNSLHIGRD
YSSKSESLRGQSGFLPFQPGGLIQQAAQDREVKDNTSSLHRNDYGLFDIPPGFTRGLQVG
GGGGGDDDDEEEEEEEGLDLETGEENIDSNGLGHDIVEPMKRHSLNDKITSGGGGGDSKG
TSEEVPFDAEEIEGLVPFDYSSFKYENKKSLDKRTWAHVVDLDHKIEDFNELVPNMARTW
PFELDIFQKEAVFHLEQGDSVFVAAHTSAGKTVVAEYAIAMANRNMTKCIYTSPIKALSN
QKFRDFKETFKDIDVGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEV
HYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRPV
PLEVFISAKNKLFKVVDSNRTFLEGEFKAHRDLLEAGNAKKELPSTTMGSGSRGGPGGTA
RGGNRGASGNRGGGRGGRGGGGGSMTANRGNFSGPKRFGSDGPNKKTWIDLVYYFKQNSL
LPAVIFVFSKKRCEEYADSLRGVDFCNAREKSEIHMFIDRAVSRLKKEDRELPQIMKIRD
MLSRGIAVHHGGLLPIVKECIEILFARTLVKVLFATETFAMGLNLPTRTVVFSSTRKHDG
RGFRNLLPGEFTQMSGRAGRRGLDKTGTVIVMAYNEPLSPTDFKEVVLSAPTKLSSQFRL
TYNMILNLLRVEALKVEEMIKHSFSENSTQVLLPENQKRYDFLMGQMKEVGIANCSKCSL
QGVEESCKLFFDYERIYGQCVAEIHKSPILKIQLLRTGRLVSFRDKNSTTRIGFVIKSDT
ASESILVLTFDHGVEYEKSAQESTLPYIPITGYLQASFPRIHYNGSMKALTIPYENVMFI
SSYSLRVSLIDVLNGTPQAVKAAEEQIKTIVRHQYWLEEMKFKQSKHLSLHELSMEKKSI
VEELRKLRAFKCANFKQHYSEFRKRHHIAEEIEGLQRLISDENLDLLPDYEQRLSVLETL
GFIDPQHNVVLKGRVACEINAGWELIITELVLDNFLGDFEPSEIVALLSCFVYEGRTQKE
EPLLVTPRLEEGKKKILTIADKLLKVFIEKRVLLTSEEEDFVESKRFALVNVVYEWANGL
SFNEIMQMSVEAEGTIVRVITRLDEICREVKNAALIIGDSKLHLKMAEAQEKIKRDIVFC
ASLYL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgattattgaggagattggtaatgactttgtcgacactttgtccgttgatccacagacg
caatccgcgtacaagaaacgcgagcctagcgaagatgaagtgaatcagcagctcgttgac
gacctattgacaccaaacgcagagctcagctgggagttgcttgacttgatacaggaaaag
ccgcaggtggatagagacagggtaattgaccgactagtcataaaccccggctcgttgaac
cggaccaaatttagattcaagaggaccggcatccacggggacatttccgggtaccaggaa
gaagtcgatttgaaaaaagtcaactcgtcggcttcgaattcgttgcatattggtagagac
tactcctccaaaagcgagagcttgaggggccagtcggggttcttgcccttccagccaggt
ggattgatccagcaagctgcacaggatcgtgaagtcaaggacaacacgctgagcttgcat
cggaatgactatggattattcgatatacctcccggttttactagaggattgcaagtcggt
ggtggtggtggtggtgatgatgatgatgaagaagaagaagaagaagaagggctcgatttg
gagactggcgaggagaacatcgacagcaatggtcttggacatgacattgtcgaacccatg
aaacgccactctttgaacgataaaatcacttctggtggtggcggtggtgattccaagggc
acatctgaagaagtgccctttgacgcagaggaaatcgagggacttgtcccctttgactat
tcctcattcaaatacgagaacaaaaaatcactcgataagcgtacgtgggctcacgtggtt
gacttggaccacaagattgaagatttcaacgagttggtgcccaacatggcacggacctgg
ccgtttgagcttgatattttccaaaaagaggccgtcttccatttggaacaaggggattct
gtatttgttgccgcacacacgtcggctggtaagactgttgtcgccgagtacgcaatcgca
atggccaataggaacatgaccaagtgtatctacacttcaccaatcaaggcactttcgaac
cagaaattccgcgatttcaaagaaacttttaaagacattgatgtggggttgatcacgggt
gacgtgcaaattaaccccgatgcaaactgcctaattatgaccacggagattttgagatcg
atgttgtatcgcggtgccgatttgattcgagatgtcgagtttgtcatctttgatgaagtg
cattatgtcaacgacattgatcgtggtgtcgtttgggaagaagtcatcattatgttgccc
gaccacgtgaaatatatcctcttgtctgccacggtgcccaatacgtttgagtttgccaac
tgggtcggcagaaccaaacaaaaggatatctacgtcatctcaactcccaagagacctgtt
ccgttggaggttttcatatctgccaagaataaactattcaaagtcgtcgattccaataga
acgttcttggaaggtgagttcaaggcacatagggacttgttggaggctggaaacgcaaag
aaggaattgccctccacgacaatgggtctgggaagccgtggaggtcctggcggaactgcg
agaggcggaaatcgaggtgcaagtgggaacagaggagggggcagaggcggaagaggtggc
ggtggtggttccatgacagcaaatcgcgggaacttttctggccccaagagattcggaagc
gacgggccaaataaaaagacctggatagatttggtttattattttaagcagaactctttg
ttacccgctgtcatttttgtcttttcaaaaaagcgatgcgaagagtatgcagactccttg
aggggagtcgacttttgcaacgccagggagaaatctgagatacacatgtttatcgacaga
gccgttagccggttgaaaaaggaggatcgggaacttccgcaaattatgaaaatccgcgat
atgctcagtcgaggcatcgccgtgcatcacggtgggctcttgcccatagtcaaggaatgc
atcgagattttgtttgccaggaccttggtcaaggtcttgtttgccacggagacttttgcc
atggggctcaatttgccgacaagaacggtggtgtttagttccacgcggaaacacgacggc
cgaggattcagaaacttgctacctggtgaattcacacaaatgtccgggagagcaggaaga
agaggcttggataagaccggtaccgttatcgtgatggcttacaacgagccgctctccccc
acggatttcaaggaagtggtcttgagcgcccccacaaagttgctgtctcaatttaggctc
acgtacaacatgattttgaatttgctccgagtcgaagcgttgaaagtggaggagatgatc
aagcattcatttagtgaaaactcgacgcaagtgctcttgcctgagaaccagaaaaggtac
gactttcttatgggccagatgaaggaggttggaatcgccaactgctccaagtgctccttg
caaggtgttgaggagagctgtaaattattctttgactatgaacgaatatatggccagtgc
gtcgctgaaattcacaagtcgccgatattgaagatccagcttctcaggacgggaaggttg
gtttcttttagagacaagaactcaaccactcgcattgggtttgtgattaaatcggatact
gcatccgaaagcatcttggttctcacttttgaccatggagtggaatatgaaaaatctgct
caagagtcaacgcttccctatattccaataacaggttatcttcaggcctccttccccagg
atccactacaacggctcgatgaaagcactcacaataccctatgagaacgtcatgtttatc
agcagttatctgctcagggtgctgttgattgacgtgctcaacggaaccccccaagcggtg
aaagctgccgaggagcagataaaaaccattgtgagacatcagtactggttggaagagatg
aagtttaagcaaagcaagcacttgtcgttgcacgagttgtctatggagaaaaagtccatc
gtggaagagttgcgcaagttgagagcattcaaatgtgcaaacttcaagcagcattactcc
gagttccgcaaacgccaccacattgccgaggaaatcgaagggttgcaaagactcatttcg
gatgaaaatttggacttgttgccggattacgagcagcggctactggtgttggagacgctt
gggttcattgacccgcaacacaatgtagtgctcaagggccgggttgcgtgcgagatcaat
gccgggtgggagttgatcatcaccgagctcgtgctcgacaatttcctcggcgactttgag
ccctccgagattgttgccttgttgtcgtgctttgtatacgaagggcgcacccaaaaagaa
gagccgttgttggtgactccgcgtttggaagaaggtaagaagaaaatcttgactattgca
gacaagttgctcaaggtgtttattgagaaacgggtgctactcacgtcggaagaagaggac
tttgtggagagcaagagattcgccttggtcaacgtggtttacgaatgggccaacgggtta
agtttcaatgagatcatgcagatgagtgtcgaggccgagggaaccattgtgcgtgttatc
accaggttggatgaaatctgccgtgaggtgaagaacgccgcgttgattatcggtgattct
aaattgcatttgaagatggccgaggctcaggagaagatcaagagggatatcgtcttttgc
gcttctttgtatttataa
DBGET
integrated database retrieval system
