Lodderomyces beijingensis: 92207229
Help
Entry
92207229 CDS
T10315
Symbol
LODBEIA_P20330
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lbg Lodderomyces beijingensis
Pathway
lbg03020
RNA polymerase
lbg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
92207229 (LODBEIA_P20330)
09124 Replication and repair
03420 Nucleotide excision repair
92207229 (LODBEIA_P20330)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbg03021
]
92207229 (LODBEIA_P20330)
03400 DNA repair and recombination proteins [BR:
lbg03400
]
92207229 (LODBEIA_P20330)
Enzymes [BR:
lbg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
92207229 (LODBEIA_P20330)
Transcription machinery [BR:
lbg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
92207229 (LODBEIA_P20330)
DNA repair and recombination proteins [BR:
lbg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
92207229 (LODBEIA_P20330)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
zf-C4pol
Motif
Other DBs
NCBI-GeneID:
92207229
NCBI-ProteinID:
XP_066828971
LinkDB
All DBs
Position
2:2132830..2138022
Genome browser
AA seq
1730 aa
AA seq
DB search
MSRQFPHSSAPLKSIKEVQFGLASPEEIRAISVAKIVYPETMDQSTKRAKEGGLNDPRLG
SIDRNYRCQTCGEDMSECPGHFGHIELSRPVFHIGFIAKIKKVLESICFHCGKLLLDETN
PLMAQAIKIKDPKRRFNAVWTICKSKMICETSEVEGGRGGCGHTQPTIRRDGMKLWGTWK
SGNFDENDQPERRLLTPSEILNIFKHISSEDCYRLGFNEDYARPEWMLITVLPVPPPPVR
PSIAFNDTARGEDDLTFKLADVIKANMNVQRLEMDGSPQHVISEFESLLQFHVATYMDND
IAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVP
ISIAKTLTYPEIVTPYNIHKLTELVKNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQ
YGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEM
NLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVM
NMCYWIPNWDGVIPPPAIVKPKPLWTGKQLLSLAIPKGIHLQRFDSGRDFLSAKDTGMLI
IDGEIMFGVVDKKTVGATPGGLIHNVMREKGPTVCAQLFSSIQKVVNFWLLHNGFSIGIG
DTIADAATMKHVTETIQEAKSKVQEIIFDAQHNNLEPEPGMTLRESFEHNVSRVLNQARD
TAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHF
TKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALED
IMVHYDGTTRNSLGDILQFIYGEDGIDATQVEKQSVDTIPGSDESFEKRYRIDVLENYSI
SESLLESAKEIAGDVKLQKLLDEEYNQLVEDRKYLREVCFPGGDFNWPLPVNLRRIIQNA
QQIFHSGREKPSDLKLDEIIASVQDLCTKFVVVRGDTPLVKEAQANATLLFQCLVRSRLA
SRRVVEEFKLNKASFEWALGEIETQFQKSVVHPGEMVGVVAAQSIGEPATQMTLNTFHYA
GVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPDVAADIESAKVVQSSIEHTTLKNVT
SSTEIYYDPDPRTTVIEEDYDTVEAYFAIPDQKVEESIEKQSPWLLRLELDRAKMLDKQL
TMAQVAEKISQNFGDDLFVIWSDDTADKLIIRCRVVRDPKSLDEDAESEEDQILKRIEAH
MLESISLRGIQGITKVFMMQHKMSHPDATGEFKQGKEWVLETDGVNLKDVMAVPGVDAAR
TYSNDFIEILFVLGIEATRHALFKEIMNVIAFDGSYVNYRHLALLVDVMTSRGHLMAITR
HGINRTDTGALMRCSFEETVEILLDAAASAELDDCKGISENVMLGQMAPLGTGAFDVMVD
DKMLQQAPASVAMEVVAEDGGATPYRDMEMEDDRIVLDEGAGFSPIHNPMTDQMNGGLTS
YGGQPTSPGITSPFAYSNTPGYGGTSPAYGGTSPGYGYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPSYSPTSPQYSP
TSPQYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPRSPEYKPKSPKTDGN
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtcaatttccccattcaagtgcgccgttaaagtccatcaaggaagtccagttt
ggtcttgcttcccccgaggaaatcagagccataagtgtggccaagattgtgtatcccgag
acgatggaccagtccaccaaacgagccaaggaaggcggattgaatgaccccaggcttgga
tcgatcgatcgcaactaccggtgtcagacttgtggcgaagatatgtcggagtgccccggg
cattttggccacattgagctaagcagacccgttttccatattggttttattgccaagatt
aaaaaagtgttggaaagtatttgtttccactgtggcaaattgctcctcgatgagacaaac
cctttgatggcgcaggccatcaagatcaaggaccccaagaggagattcaacgcagtttgg
acgatttgcaaaagcaaaatgatttgcgaaacaagcgaagtagagggtggcagaggcggc
tgtggacacacgcagcccaccattcgtcgagacggaatgaaactttggggtacttggaaa
agcggtaactttgacgaaaatgaccagcctgaacgtcgtttgttgactccgtcagagatt
ttgaacatattcaaacatataagctcagaggactgctatagattagggttcaatgaggac
tatgccagacccgagtggatgttgataaccgttttacctgttccgcctcctcctgttcgg
ccaagtatcgcgtttaacgacacggcgagaggcgaggatgacttgacgttcaagctagcc
gatgttataaaagcaaacatgaatgtgcaaaggttggagatggacggttcgccacaacac
gttattagtgagtttgaatctttgctccagtttcacgttgccacttatatggacaatgat
atcgctggccaaccgcaggcgttgcaaaagacgggccgtccgataaaatcgattagagca
agactaaaaggtaaagaaggccgtttgagaggtaacttgatgggcaaaagagttgacttt
tcagcgcgtaccgttatttcgggtgaccccaacttggacttggaccaagtcggtgtgccc
atctccatcgcaaagacattgacatatccggagattgtcaccccttacaacatccacaaa
ttgaccgagcttgttaaaaacgggcccaacgagcacccgggtgccaaatatgtcattaga
gacacgggtgaccgtattgatttgagatacaacaagagggcaggagacattgccttacag
tatggctggaaggttgagcgtcaccttatggatgacgaccccgtcttgttcaatcgtcaa
ccctctttacataagatgtcgatgatggcgcacagagtcaaagtgatgccctactcgaca
ttcagattgaacttgtcagtaacgtctccttacaatgccgatttcgacggagatgagatg
aacttgcacgtgccgcagtcgcccgaaacgagatcggaactttcgcaaatctgtgccgtt
cctttgcaaattgtgtcgccgcaatcaaacaagcccgttatgggtatcgtgcaagacacg
ttgtgcggtatccgtaaaatgacattgagagacatatttattgagtacgatcaagtgatg
aacatgtgctactggatccccaactgggatggggtgattcctcctccggcaattgtgaaa
cccaagcctttatggacggggaaacagttgctctcgttggcaataccaaaagggatccat
ttgcaacggttcgatagcggcagagatttcttgagcgcaaaggataccggcatgctcatc
attgatggagaaatcatgtttggagttgtcgataaaaagacggttggtgctactcccggt
gggttgatccacaacgttatgagggaaaagggaccaacagtgtgtgcccagttgtttagt
tcgattcaaaaagtggtcaatttttggctcttgcataatgggttcagtataggtattgga
gacaccattgccgatgccgccaccatgaagcacgtgacggaaacaatccaggaggccaag
tcgaaagtgcaggagattattttcgatgcccagcacaacaacttggagccagagccaggt
atgaccttgagggaatcttttgagcacaatgtttcgcgagtcttgaatcaagcgcgtgat
accgctggtcgttcggcagaaatgagtttgaaggacttgaacaatgtcaagcagatggtg
acttcgggttcaaagggttcttttatcaacatttcgcaaatgagtgcctgtgttggccag
caaattgtcgaaggtaaaagaatcccctttggctttgccgatagatcgttgccacatttc
accaaggacgattactcacccgagtctagagggtttgtcgagaattcttatttgagaggt
ttgaccccgcaagagtttttctttcacgcaatggcaggtagagagggtcttatcgatacc
gcagtgaagacggccgaaactggttatatccagcgtcgtttggttaaagctctagaggat
atcatggtccactacgatggtacaaccagaaactcgttgggtgatattcttcagtttatc
tacggagaagatggtatcgatgccacgcaagtggagaagcaatctgttgataccatcccc
ggatcagacgagagctttgaaaagagatatagaatcgatgttttggaaaactattccatt
tcggaatccttgttggagtcggccaaggaaattgcaggtgatgtcaagttgcagaaacta
ctcgatgaggagtataaccagcttgttgaagatcgaaaatatttgagagaagtttgtttt
cccggcggtgactttaactggccgttgcctgtcaatttgcgtcgtattatccagaatgca
cagcagatattccacagcgggcgtgaaaaaccttccgatttaaagttggatgaaatcatc
gcgagcgtgcaagacttgtgcaccaagtttgtcgttgttagaggtgacactccgttggtg
aaggaggcgcaagcaaacgccactttgctcttccaatgccttgtgagatcgagattagca
tcgagaagagtcgttgaggagttcaagttgaacaaggcatcttttgaatgggccttgggc
gagattgaaacgcagttccaaaagtctgttgtccacccaggtgagatggttggtgtcgtt
gccgcccagtccattggagagcctgctacccagatgacattaaacactttccactatgcc
ggtgtctcttcaaagaatgtcactttgggtgttcccagacttaaggagattttgaacgtg
gccaagaacatcaagactccggcattgacggtttacttggatcccgatgtggcagccgac
attgaactggccaaagtggttcaatcctcgattgagcacaccactttgaagaatgtcacg
tcttcaactgaaatttactacgaccccgatccacgcacgacggttattgaggaagattac
gacacggttgaggcctattttgcaattccagatcaaaaagtggaggagagcatagaaaaa
cagtctccttggctccttagattggaactcgatcgtgccaagatgttggacaaacagttg
actatggcacaagtggcggaaaagatttcgcagaatttcggcgacgacttgtttgtcatt
tggtcagatgacaccgccgacaagttgatcatccgttgtcgtgttgtgagagatccaaag
tcgttggacgaggatgccgagtccgaagaggatcaaatcttgaaacgtattgaagcgcac
atgttggagtccatttccttgcgaggcattcagggcatcaccaaagtgtttatgatgcag
cacaagatgagccacccggatgccacgggtgagtttaaacagggcaaagaatgggtgttg
gaaacagatggtgtcaatttgaaggatgtcatggccgttcccggtgttgatgctgcacgt
acctactcgaatgactttatcgagatattgtttgtgttgggtatcgaggccacgaggcac
gcgttgttcaaggaaatcatgaatgtcattgcattcgatggttcctacgtcaattatcgt
cacttggcgctcttagtggacgtgatgacgtctcgtggccacttgatggcaatcactcgt
cacggtatcaacagaacggacaccggtgcgttgatgcgttgttctttcgaagagacggta
gagatattgttggacgcagcagcgtcggccgagttggacgactgcaaaggtatttccgag
aatgtgatgttgggtcaaatggcgccgcttggtacgggtgctttcgacgttatggtggac
gacaagatgttgcagcaggcgcctgctagtgttgccatggaggttgtcgccgaggatgga
ggagccacgccctatagggacatggagatggaggacgaccggatcgttttggacgaaggt
gcaggtttctctccaatccacaacccaatgaccgatcaaatgaacggaggcttaacctct
tatggtggacaacctacttcgcctggaattacttctccctttgcttactccaatactcca
ggatatggaggtaccagtccagcatatggaggcactagtccgggttatggttactcgcca
acgtcgcctagctactcaccgacatcgccatcatactcgcctacatcgccatcatattcg
cctacatcgccaagttattctcctacatcgccatcatactcgccaacgtcaccaagttat
tctcctacatctcctagttactcgccaacatcgccatcatactcacctacatctcctagt
tactcaccaacatcgccatcatactcacctacatctcctagttactcacctacatctcct
agttactcaccaacatcaccatcatactcacctacatctcctagttattcaccaacatca
ccatcatactcaccaacttccccatcgtactcacctacatctccacagtactcgccaacg
tcaccttcgtactcacccacatcaccttcgtactcgcccacgtctccgcagtactcgcca
acttccccacaatactcacctacttcacctagctactcacccacgtcgcctcaatattca
cctacatctccccagtattcaccaacatcgccacaatactccccgaggtcgccagagtac
aaaccgaaatcccccaaaactgacggtaattag
DBGET
integrated database retrieval system
