Lodderomyces beijingensis: 92209068
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Entry
92209068 CDS
T10315
Symbol
LODBEIA_P38720
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lbg Lodderomyces beijingensis
Pathway
lbg03013
Nucleocytoplasmic transport
lbg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
92209068 (LODBEIA_P38720)
03015 mRNA surveillance pathway
92209068 (LODBEIA_P38720)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbg03019
]
92209068 (LODBEIA_P38720)
Enzymes [BR:
lbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
92209068 (LODBEIA_P38720)
5.6.2.5 RNA 5'-3' helicase
92209068 (LODBEIA_P38720)
Messenger RNA biogenesis [BR:
lbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
92209068 (LODBEIA_P38720)
mRNA cycle factors
Common to processing body (P body) and stress granule
92209068 (LODBEIA_P38720)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
UvrD-helicase
SLFN-g3_helicase
Viral_helicase1
ResIII
NPHP3_N
DEAD
Helicase_RecD
AAA_22
nSTAND3
PhoH
AAA_16
ATPase
AAA_10
Transp_Tc5_C
Motif
Other DBs
NCBI-GeneID:
92209068
NCBI-ProteinID:
XP_066830810
LinkDB
All DBs
Position
4:1991946..1994744
Genome browser
AA seq
932 aa
AA seq
DB search
MSTVFGEDREHDFDEAAEAPGFELSQNPHACAYCGVNTPNSVIKCNTCNKWFCNDKTNSS
SSHIVTHLVMSRHNQVSLHEESDLGDTTLECYNCGNKNVFMLGFVSAKQESVVVILCRLP
CARSKDINWDTSHWQSLIEDRQFLSWLAPPPSEEALIDSRQVTPQQISKLEAQWRLNRDA
TINDVENNDVAEESVLPILMRYNDGFQYQRSFGPLVKLEADYDKNLKESQALEHIQVKWA
LGLNNRHLASFTLMTFETSNLKVAVGDEIILRYNGSQREPWEGHGFILRLPNSYQEEFTL
ELNASKVAPPTNLTNDFTAEFVWKGTSYDRMQQAMKDFATDEESVSSYLYHKLLGHDVAP
VEFDIEAPEKFSHPKLTELNISQTNAVRSVLQRPLSLIQGPPGTGKTVTSATIVYHLSRL
NKEKILVCAPSNVAVDHLAEKLDSLGLRVVRLTAKSREDVESSVSHLALHHIVNKSAKGE
LKKLIKLKNEVGELSVEDAKNFIKNLRASELKILSKAEVVCCTCVGAADKRLAQFKFRTV
LIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILDRKAADAGLKQSLFERLVFLGH
VPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSQDRLVEEAMFPWPVLDTPMMFWANYG
REELSGSGNSYLNRVEAMNVERIITRLFKDGIRPEQIGVITPYEGQRAYLVQFMSINSTI
LDKRHEYLEVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTRAKYGLL
VLGNPRALSRNKLWNHLLIHFREKGCLVDGPLDNLQLSMVQLNNYAARGTTKGPKRNPLG
ASSTAFSTATFDGGSMANEASDVQRQQKVRDELWPALANQSNYYNGDNSISANFYSKLHK
IDKKYEGARYSGENIEDDIRSITSSFAAGLNF
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagtgtttggggaagaccgtgagcacgactttgatgaggcggcagaggcaccc
gggtttgagttgagccaaaacccacatgcgtgtgcctactgtggagtcaacacccccaac
tcggtgatcaagtgcaacacgtgcaacaagtggttctgcaacgacaagaccaactcttct
agttcccacattgtcacccacttggtaatgtcccgccacaaccaagtcagcttgcacgaa
gagtcggatctaggcgacaccacgttggagtgctacaactgcggcaacaagaacgtgttt
atgttggggtttgtctctgccaaacaggagtctgtcgtggtgatcctctgccgtttgccc
tgtgcacggtcaaaggacatcaactgggacacgagccactggcagtcgctcattgaagac
cggcagtttttgtcgtggttggcgccgcccccgagcgaggaggcgttgattgattccagg
caggtgaccccgcagcagatttccaagttggaggcccagtggcggttgaaccgggatgcg
actattaatgacgttgagaacaacgacgttgccgaagagctggtgttgccgatattgatg
cggtacaacgacgggttccagtaccagagatcgtttggcccgttggtgaaattggaagcc
gactacgataaaaacttgaaggagtcgcaagcgctagagcatatccaggtcaagtgggcc
ttggggttgaacaacagacacttggcctcgttcacgttgatgacgtttgagacctccaat
ttgaaagtggctgtgggagatgagattatattgcgctataacggcagccagagggagccc
tgggaagggcatggctttatattgagattgcccaattcttaccaggaggagttcacattg
gagttgaacgcgtccaaagtggcgccaccaacaaacttgaccaacgactttactgccgag
tttgtgtggaaaggcacctcgtacgaccggatgcagcaagcaatgaaggactttgccacg
gacgaagagtctgtttcgtcatacctctaccacaagttgttgggccacgatgtggctccc
gtggagtttgacattgaggccccggagaaattctcgcacccaaagttgaccgagttgaac
atctcccagaccaacgccgtgaggtctgtgttgcaaagaccgctctctttgatacaagga
ccaccggggacaggcaaaactgtcacctccgccacgatagtctaccatttgtcccgcttg
aacaaggagaagatcttggtttgcgcgccttcaaacgtagccgttgaccacttggccgag
aagttggactcgttggggttgcgggtggtgcggttgacggccaagtcacgcgaggacgtc
gagagctccgtgagccacttggcgttgcaccacattgtcaacaaatcggcaaagggagag
ttgaagaagttgatcaaattgaaaaacgaggttggcgagttgtcggtggaggatgccaaa
aactttatcaaaaatttgcgtgcgtccgagttgaagatattgagcaaggccgaggttgtg
tgttgtacgtgtgtgggtgctgccgacaagagactagcccagttcaagttcagaacagtg
ttgatagatgagagcacccaggcctccgagccggaggtgttgatccccatagtcaaagga
gccaagcaagtgattctcgtgggcgaccaccagcagttggggcctgtcatcttggaccga
aaagccgccgatgccgggctaaagcagtccttatttgagcgattggtctttctcggacac
gttccgattcggttggaagtgcagtacagaatgcacccgtgcttgtccgagttccccagc
aacatgttctacgaaggctcactccaaaacggagtcactagccaggaccggttggtggag
gaggcgatgttcccctggcccgtgttggacaccccgatgatgttctgggccaattacggc
cgtgaggagttgagcggcagcggcaactcgtacttgaaccgagtcgaggcgatgaacgtg
gagcggatcatcacgcggttgttcaaggacgggatcaggccggagcagattggggtgatc
actccctacgagggccaaagggcgtacttggtgcagttcatgtccatcaactcgacaatc
ttggacaagcggcatgagtatcttgaagtggagattactagtgtcgacgcgttccaaggg
cgggagaaggactttatcatcttgagctgtgttcgcgccaacgactcgcaaagcattggg
ttcttgagcgatccgcggaggttgaacgtggcgctcaccagggccaagtacgggttgttg
gtgttggggaacccacgcgcattgtcgcgcaacaagctatggaaccacttgttgatccat
ttccgcgaaaaggggtgcttggtcgatggaccgttggacaacttgcagctttccatggtg
cagctaaacaattacgctgcgcgaggcaccaccaaagggccaaagaggaacccgcttggc
gcttcatcgacggcattctcgaccgccacttttgacggcggcagcatggccaatgaagcg
tctgacgtacaacgccagcagaaggttagggacgagttgtggcccgcgttggccaaccag
tcaaactactacaacggcgacaactccatcagcgccaatttctacagcaagttgcacaag
attgataaaaagtacgaaggtgcgagatacagcggggagaatatcgaggacgacatccgg
agcatcaccagctcgtttgccgcgggattgaacttttaa
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