Lodderomyces beijingensis: 92209454
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Entry
92209454 CDS
T10315
Symbol
LODBEIA_P42580
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lbg Lodderomyces beijingensis
Pathway
lbg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
92209454 (LODBEIA_P42580)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbg03021
]
92209454 (LODBEIA_P42580)
03019 Messenger RNA biogenesis [BR:
lbg03019
]
92209454 (LODBEIA_P42580)
Transcription machinery [BR:
lbg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
92209454 (LODBEIA_P42580)
Messenger RNA biogenesis [BR:
lbg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
92209454 (LODBEIA_P42580)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Clp1_ID
CID
zf_PCFS4
VHS
zf_UBZ
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
92209454
NCBI-ProteinID:
XP_066831196
LinkDB
All DBs
Position
5:873465..875099
Genome browser
AA seq
544 aa
AA seq
DB search
MTDVLTEYKNKLSELSFNSQPIITELTQKAKQHPELADQIMDLVSERIYHTVPEQKLYAL
YVLDDICKVIGNPYNILIGDEIYSIFVHVFQMNNDTIRDKMVRLFNTWKVSTLRNTDILT
FPKEQLSKIEQFLKKAEYPRPVVTSPRQRTPVAMAAGVLPPRPGVSLQQSLINDIDHLIP
IFEAQLRGNNNRDAKVHDRFKALNKLKTLLSSKEMKPVELEAIKTHIVNIQAQTVTPATT
PIPPPHPQPSPAAIVNPAMGLFQDLILSGLVKKEQEPIPGSKPVYTLMFPEEKYSRDQGM
MDLDTLEDILLQSSSIPRSEYDKLKFVELMNVMKKTADGDLQHYINSNKPSSSLTDLLYD
AKPSKCSICGKRFATDAEGTTGKRLHLDWHFRMNKKSSVKGGNIQSRNWYLDDVDWVQFD
ENTTVLQRTDQKENSFLADEGAGGGGDGVGAGAGAGAAGNGTGGQASYVVVPSNDTNMNN
RCLICREQVRAKYNDEIGEWVWNDCMRQSGEKNSRRIVHVSCYNDRKRAADTDLNPFNIK
REKI
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgttcttaccgagtacaagaataagctctcagagttgagcttcaactcgcag
cccatcataacagagttgacccagaaggcaaaacagcacccggaacttgcagaccaaata
atggacttggtttcggagcggatctaccataccgttcccgagcagaagctttatgcgttg
tatgtgctcgatgacatttgcaaagtgataggcaacccctacaacatcttgattggagac
gaaatctacagcatctttgtccatgtgtttcagatgaacaacgacacgattcgagataaa
atggtccggttattcaacacttggaaagtgagcacgttgagaaacacagacatcttgact
ttcccgaaggaacagctcagcaagattgagcagtttttgaaaaaggccgagtacccaaga
ccggtggtgaccagtccgcgacaacgaacaccggtggccatggcggcgggggttcttcct
cctcgaccgggagtatcgcttcagcaatcgctaataaacgacattgatcacttgataccg
atatttgaagcccagttgcgcggcaacaataaccgagatgcaaaggttcacgacagattc
aaggcgttgaacaagctcaagaccttgttgctgtcgaaggagatgaaaccggtggagttg
gaggctatcaagacccacattgtcaacatccaggcccagacagttactcctgccaccact
cctatcccaccaccacacccacaaccatcgcctgcagctatagtcaaccctgccatgggg
ttattccaagacttgatcttgtcgggattggtgaaaaaggagcaggagccgataccaggc
tcaaagccggtttacaccttgatgttcccagaagaaaaatactcgcgcgatcaaggcatg
atggatctagacactttggaagatatcttgcttcaaagcagctcgataccaagatcggag
tatgacaagttaaagtttgtcgaattgatgaatgtgatgaagaaaacggccgacggcgac
ttgcagcactatatcaacagcaacaagccttcgtctagcttaaccgacctactttacgat
gccaagccttccaaatgttccatttgtggcaaacggttcgcgaccgatgccgagggcacc
acaggcaagaggttgcatttggattggcatttcaggatgaacaagaaactgagcgttaag
ggaggcaatatccaatcgcgaaattggtatcttgacgacgtagactgggttcaatttgac
gaaaatacaaccgtgctacagcgaactgatcagaaggaaaactctttccttgctgatgaa
ggagcaggaggtggaggagacggtgttggtgctggtgctggtgctggtgctgccggtaac
ggcactggaggacaagcttcctacgttgttgttccttcaaacgacaccaacatgaacaac
agatgcctcatttgtcgagaacaagttcgtgccaaatacaacgacgaaatcggcgagtgg
gtctggaacgattgtatgagacagtcgggagagaaaaacctgcgaagaattgtgcatgtg
agctgctataacgacaggaaaagagccgctgataccgacttgaacccattcaacatcaaa
agagaaaagatttaa
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