Lodderomyces beijingensis: 92210021
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Entry
92210021 CDS
T10315
Symbol
LODBEIA_P48250
Name
(RefSeq) uncharacterized protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lbg Lodderomyces beijingensis
Pathway
lbg03008
Ribosome biogenesis in eukaryotes
lbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
92210021 (LODBEIA_P48250)
09123 Folding, sorting and degradation
03018 RNA degradation
92210021 (LODBEIA_P48250)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbg03021
]
92210021 (LODBEIA_P48250)
03019 Messenger RNA biogenesis [BR:
lbg03019
]
92210021 (LODBEIA_P48250)
03009 Ribosome biogenesis [BR:
lbg03009
]
92210021 (LODBEIA_P48250)
03016 Transfer RNA biogenesis [BR:
lbg03016
]
92210021 (LODBEIA_P48250)
Transcription machinery [BR:
lbg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
92210021 (LODBEIA_P48250)
Messenger RNA biogenesis [BR:
lbg03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
92210021 (LODBEIA_P48250)
Ribosome biogenesis [BR:
lbg03009
]
Eukaryotic type
Pre-60S particles
RNases
92210021 (LODBEIA_P48250)
Transfer RNA biogenesis [BR:
lbg03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
92210021 (LODBEIA_P48250)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF7794
Motif
Other DBs
NCBI-GeneID:
92210021
NCBI-ProteinID:
XP_066831763
LinkDB
All DBs
Position
6:complement(210749..213685)
Genome browser
AA seq
978 aa
AA seq
DB search
MGVPALFRWLSRKYPKIISSVIEADEDEHDGIGGAKYSEPNPNGEVDNLYLDMNGIVHPC
SHPEHKRAPETEDEMFLDIFAYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFRSA
QDAKIKDLAIAKEIREKEARGEMIDEAVKGKKQWDSNAITPGTPFMDRLAEALRYWVAYK
LASDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPSYNPNTRHCIYGLDADLIFLGL
ATHEPHFRVLREDVFANQEKRMTISDHIAMSRDQADLIQEKERKKPFLWLHVNVLREYLS
VELQNPRLSFPFDLERAIDDWVFICFFAGNDFLPHLPSLDVRDNGIDTLVNCWKKCLPRL
RDYVTCDGKLNLESVETLMADLANKEGEIFQSRFRAEQRREENRKRRKLADEQDRALKNI
YLSQVSKGREKAPLQADVNMPLMDTSGHNVEGFAPLSNKDIVHNLDTITKAGMANHDAAA
ALKKLIDSRKSSSSKEDTPVDSSDNTSATNTDREDAVRTKKRTLGGNDETQEETEVVDGI
RLHEPGYQKRYYQVKFHCKTDEEVEETKRQVVKSYVEGISWVALYYYQGCPSWNWFYPYH
YAPFAGDMTNLKELFPEGVKFNLGKPFKPYEQLMSVLPAASSHALPEVFHPLMKDPDSEV
IDFYPEEFEIDMNGKKMSWQGIPLLPFIDETRLLASVQAKYDQLTEYESNRNVNKEAELF
ISSENKNYKTFSTAFYDKESEDTVDFKFAKTGLAGVAIKMSKFEPRGVLDYPLKEGQMPN
VEKKDYLQVEYHFPLKKRGKSMLLNGFISPHAALTVADRNEILYKLDSGDVRGRGGYHNN
NHISNNDYINRGPVGTEIFKTYGMRKGGYRSHLHMMKNQASGTNMGGNMGAYVNTHMHTH
TYTQMQSHSYMQPPAQYGRSQYGQNPAFRPNSRHSSQNHHHTSNQHKYYNNGQGQLYTAS
NPGFLPPKSQSGRNGYRS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattatttcggtggctctctcgaaaatacccaaagattatctcgtct
gttattgaagcggatgaagatgagcacgacgggataggaggagccaagtatctggaacca
aaccccaacggcgaagtcgacaacctttacctcgatatgaacgggatcgtccatccttgc
tcgcatcccgagcacaagagggcgccggagacagaagatgagatgtttttggacattttc
gcttatacagaccgggtgttgatgatggcgcggcctcggaaagttttgatgattgccgta
gacggtgttgcaccaagggccaagatgaaccagcagagagcgagaaggttcaggtctgcc
caggacgccaagatcaaggatctcgcgatagccaaggagatacgcgagaaagaggcccgc
ggcgagatgattgacgaggcggttaagggtaagaaacagtgggattccaacgccatcacc
ccgggaacaccttttatggaccgactagctgaggcgttgaggtactgggtcgcgtacaag
ttggccagcgaccccggctgggccaacctccaagtgattataagcgacgccacggtcccc
ggcgaaggggagcataagctaatgagctttatacgttcgcagaggtcggacccgctgtat
aacccaaacacaagacattgcatatacgggttggatgccgatttgatcttcttgggtcta
gctacgcatgagcctcatttcagggtcttgagagaggatgttttcgccaatcaagaaaag
cgaatgactatatctgaccacatcgccatgtcgcgagaccaagccgacctcatccaggag
aaggaacgcaaaaaaccgtttttgtggttgcatgtcaatgtgttgcgcgagtacttgtcg
gttgagctccaaaacccgagattgtcattcccttttgatttggagcgagccatcgatgac
tgggtctttatctgtttctttgccgggaacgatttcttgccgcacttgcccagtttggac
gtcagggacaatggcatcgacaccttggtcaactgctggaaaaagtgtctccccagactc
cgcgactatgtgacgtgcgacggcaagttgaatttggagagtgtggaaacgttgatggcc
gacttggcaaacaaagaaggcgagatcttccagagccggttccgggcagagcaaagaaga
gaggagaaccgcaagagacgcaagctcgcagacgagcaggatagggcgttgaaaaacatt
tacttgtcgcaggtctcaaaaggcagggaaaaggcccccttgcaggcagatgtaaacatg
cccttgatggataccagcggacacaatgtcgagggctttgctccgttgtcgaacaaggac
attgtgcacaacttggacaccataacaaaggcaggaatggcaaaccacgacgcggcagca
gcattgaagaagttgattgactcaaggaagctgctgctgctgaaagaggatacccctgtt
gattcttcagacaacacatcggctacaaacaccgaccgcgaagacgctgtcaggacaaag
aagagaacactcggcggcaacgacgaaacgcaagaggagacagaagtagttgacgggatc
aggttgcacgagccgggctaccaaaagcggtactaccaagtaaagttccactgcaagaca
gacgaagaagttgaagaaacaaaacgacaagtggtcaagagctacgtcgaaggtatatcg
tgggttgccttgtattactaccagggctgtccctcttggaactggttctatccttaccac
tatgcgccatttgccggggacatgaccaatttgaaagaattgttccccgaaggagtcaag
ttcaacttggggaagccattcaaaccctacgagcagttgatgtctgttcttcccgcggcc
tcgagccatgccttgcccgaggtctttcatcccttgatgaaggacccagacagcgaggtt
atagatttctacccggaggagtttgaaatcgatatgaacggcaaaaagatgagctggcag
ggtattcctctattgccctttattgacgagacacggctcttggcctctgtccaggcaaag
tacgaccagcttaccgagtacgagagcaacagaaacgtcaataaagaggcagagttgttc
atttccagcgagaacaagaattacaaaacgttctcaaccgctttttatgacaaggagctg
gaagacaccgttgatttcaaatttgcaaagacggggctcgcgggagtcgccatcaaaatg
agcaaatttgagccgcgcggggtgctagattacccgttaaaagagggccaaatgcccaat
gtggaaaagaaagactaccttcaagttgagtatcatttccccttaaagaagagaggcaag
tcgatgcttttaaatggattcatttcgccgcatgcagccctcactgttgcagacaggaac
gagattctctacaagttggactcgggagatgtacgcggaaggggcggatatcataacaac
aaccatataagcaataatgattatatcaatagaggaccagtcggcactgaaattttcaag
acttatggaatgagaaaaggcggttacaggtctcatttgcacatgatgaaaaaccaagcc
agcggcacaaacatgggaggaaacatgggtgcatacgtgaatacacacatgcacacacat
acgtacacgcaaatgcagtcccactcgtacatgcaaccaccggcacaatacggccgctct
caatacggccagaacccggcattccgtccgaattccaggcattcgagccaaaaccatcac
cacacgtcgaaccagcacaagtattacaataacggccaagggcagctatacacggcctcc
aaccctgggtttttgccaccaaagctgcagtcggggaggaacggttatagatcttaa
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