Lodderomyces beijingensis: 92210155
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Entry
92210155 CDS
T10315
Symbol
LODBEIA_P49590
Name
(RefSeq) uncharacterized protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lbg Lodderomyces beijingensis
Pathway
lbg03013
Nucleocytoplasmic transport
lbg03015
mRNA surveillance pathway
lbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
92210155 (LODBEIA_P49590)
09122 Translation
03013 Nucleocytoplasmic transport
92210155 (LODBEIA_P49590)
03015 mRNA surveillance pathway
92210155 (LODBEIA_P49590)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbg03019
]
92210155 (LODBEIA_P49590)
03041 Spliceosome [BR:
lbg03041
]
92210155 (LODBEIA_P49590)
Enzymes [BR:
lbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
92210155 (LODBEIA_P49590)
Messenger RNA biogenesis [BR:
lbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
92210155 (LODBEIA_P49590)
Spliceosome [BR:
lbg03041
]
Complex C
Other components
EJC/TREX
92210155 (LODBEIA_P49590)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
92210155 (LODBEIA_P49590)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
92210155
NCBI-ProteinID:
XP_066831897
LinkDB
All DBs
Position
6:join(528191..528413,528801..529879)
Genome browser
AA seq
433 aa
AA seq
DB search
MSAENQEELLDYSDSEEIAVPTTAQAGEGEASNDTEADKKGSYVGIHATGFRDFLLKPEL
LRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEIST
LVICHTRELAYQIKNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDTCPHIVVATPG
RLHALVQDKAIRLNNIKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQVMMFSATLSQE
IRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKLSDLLDSLEFNQVIIFV
KSTQRANELNKLLCACNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIE
RINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSRFDVKITEF
PEEGVDPSTYMNT
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctgaaaatcaagaagaattattagactactctgactcagaggaaattgcagtg
ccaaccaccgctcaagccggcgaaggcgaagcttccaacgacaccgaggctgacaagaaa
ggttcatatgtcggtatccacgccactggtttcagagactttttgttgaagcctgaatta
ttaagagccattggtgattgcgggtttgaacatccctcagaagtccaacaagtttgtatc
ccacaatccatattgggtactgatgtcttgtgtcaagccaaatccggtttaggtaaaact
gccgtgtttgtattgtctacattgcaacagttggacccggttccaggcgagatttccacg
ttggtcatttgccacacgagagaattggcctaccaaatcaaaaacgagtacgcgagattc
tccaaatacatgcccgacgttaaaaccgaggtgttttacggtggtactccggtcaagaga
gacattgaaaagttgaaaaacaaggacacttgccctcacattgtggttgccactcccggt
agattgcacgctttggttcaagacaaggccatcagattgaacaacatcaagtcgtttgtg
attgacgagtgtgacaaagtgttggagtccatcgatatgagaagagacgtgcaggatatc
ttcagagccacgccacaccaaaaacaagtcatgatgttttcagccaccttgtctcaagag
attcgtcccgtttgcaagaaattcatgcagaatcctttggaaatttatgttgacgatgaa
gctaagttgactttgcacggtttgcaacaatactacatcaaattggaagagaaggaaaag
aatagaaagttgtcggacttgttggactctttagaattcaaccaggtgattattttcgtc
aagtccactcaaagagcaaatgaattgaacaagttgttgtgcgcttgcaacttcccttcc
attgccgttcactcgggattgccacaagaggaaagaatcgagagatacaagtcgttcaaa
gagtttaacaagagaatctgtgtttccactgatgttttcggtagaggtatcgatatcgag
agaatcaacttggcgatcaactatgacttgccaaacgaggctgaccagtacttgcacaga
gttggtagagctggtagatttggtaccaaaggtttgggtatttcttttgtttcgacaaag
gaagacgaggaagtcttggagaagatccaaagcagattcgatgtgaaaatcaccgagttc
ccagaagaaggagtcgacccatccacctacatgaacacataa
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