Lodderomyces beijingensis: 92211274
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Entry
92211274 CDS
T10315
Symbol
LODBEIA_P60780
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lbg Lodderomyces beijingensis
Pathway
lbg03018
RNA degradation
Brite
Enzymes [BR:
lbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
92211274 (LODBEIA_P60780)
Messenger RNA biogenesis [BR:
lbg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
92211274 (LODBEIA_P60780)
Spliceosome [BR:
lbg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
92211274 (LODBEIA_P60780)
Complex C
U4/U6.U5 tri-SnRNP related factors
92211274 (LODBEIA_P60780)
Ribosome biogenesis [BR:
lbg03009
]
Eukaryotic type
Pre-60S particles
Helicases
92211274 (LODBEIA_P60780)
Transfer RNA biogenesis [BR:
lbg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
92211274 (LODBEIA_P60780)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Angiomotin_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
92211274
NCBI-ProteinID:
XP_066833016
LinkDB
All DBs
Position
8:complement(808837..812058)
Genome browser
AA seq
1073 aa
AA seq
DB search
MDDLFDVFDEAPQTVPPKIEESEEAHQNGTSKKRTREDQVSDEQDHPSPSPSPSPSSEAK
ANGKKAKHQDKIKPVVFDSVEIEASREVDAAGGFQQTTDDANTKLKLRHQVRHQVAVPPG
YPYVPISEHKRQNEARTYPFTLDPFQDTAISCIDRSESVLVSAHTSAGKTVVAEYAIAQS
LREKQRVIYTSPIKALSNQKYRELQADFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYR
GSEVMREVAWVIFDEVHYMRDKSRGVVWEETMILLPDKVHYVFLSATIPNAMEFAEWIVK
IHNQPCHVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMTTIGDNQGDDP
AAAPGNDRGKGGGQARAGKKGQSFKGGNKDGKTDIYKIVKMIYQKKFNPVIVFSFSKRDC
EALALKMSKLDFNSDEERAALTKIYENAISLLPENDKELPQIKNILPLLKRGIGIHHSGL
LPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQ
MSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGI
SPEYMLESSFYQFQNAASVPELERKQNVLKAEIEDVHIDDEATVKDYYDLSQQLDKYNAD
LRKVITHPGHILPFIQDGRVVKIKIGQDDYGWGMVTNFAKRQPGRFQKQEFTAHESYVVN
VFVCTMFVDSPVNLIKPFNPVLPSGIRPAGPGEKARAEFIPITLDSIEKISSVRLKVPDD
YKSAQAKRTLVKTMKDLPKRLKDGIPLMDPVASMKIDDDDFKTLLRKIDVIESKLSSNPL
HDTARLPDLYKKYSHKAEIEKRLKDLSAKILEAEAVIQLDDLRHRKRVLRRLGFTTQNDI
IELKGRVACEISTGDELLLTELIFNGNFNDLSSEQAAALLSCFVFQERAKESPRLKPELA
EPLKSMQEMASKIAKVSRECKIDILEKDYVESFRPELMEVVFAWCKGATFTQICKMTDVY
EGSLIRMFRRLEELIRQLAQAAKAIGNNQLQEKMERSLELVHRDIVSAGSLYL
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggatgacttgtttgatgtgtttgacgaagcgccgcagacagttccaccaaagatagaa
gaaagtgaggaagcacaccagaacggaaccagcaagaaaagaactcgtgaagatcaagta
agcgatgagcaagaccatccatcgccatcaccatcaccatcaccatcatccgaagctaaa
gcaaacggaaagaaagcaaagcatcaagacaaaatcaaacccgtggtctttgactcggtg
gaaatagaagcgtcgagggaagttgacgcggcggggggtttccagcaaactacagacgat
gcaaacaccaagttgaagttgagacaccaggtcaggcatcaagttgccgtgccgccagga
tacccctatgtaccgatcagtgaacacaaacgccaaaacgaagcaagaacgtatccattc
acgttggaccctttccaagataccgctatttcgtgcatcgatcgaagtgaaagtgttttg
gtttcagctcacacatcagcaggcaaaactgttgttgcagaatatgcaattgcacagtca
cttcgagaaaagcaacgagtgatatacacctccccaataaaggcgttgtcgaaccaaaaa
tatcgagagttgcaagctgatttcggcgatgtggggctaatgacgggtgacgtgaccatt
aacccagatgccggttgcttggtgatgaccaccgagattttgcgaagtatgctctaccga
ggctccgaggtgatgcgagaagttgcctgggtgatattcgatgaagtccactacatgagg
gataaatcaagaggtgtcgtttgggaggaaaccatgatcttgttgcctgataaagtccac
tatgtctttttgtcagctacgataccgaacgccatggagtttgcagagtggatagtcaag
atccacaaccagccgtgccatgttgtttacactgatttcagaccgacccctttgcagcat
tatttgttccccgctggtggcgatggtattcatttggttgtcgatgaaaagggtactttt
agagaagaaaacttccaaaaggccatgaccaccattggtgataaccagggagacgatcca
gctgctgcccctggaaatgacaggggaaaggggggcggccaagcacgagcaggtaagaaa
gggcaaagtttcaaaggcggaaacaaggatggcaaaaccgatatttacaaaatcgtcaag
atgatctaccaaaagaaattcaaccccgtgattgtcttttccttttccaaaagagattgc
gaggcgttggcattgaagatgtcgaaattggacttcaatagcgatgaagaacgagcagca
ttgaccaagatttatgaaaatgccatcagcttgctcccagagaacgacaaggagttgccc
cagattaaaaatatactacccttgttgaaaagaggcatcgggatccaccactcggggttg
ttgccgatcttgaaggagattatcgagattttgttccaggaagggtttttaaaagtgctt
tttgccacggaaactttttccattggtctcaatatgcccgccaagactgttgttttcacc
tctgttcgtaagtgggacggtgtcgggttcaggtgggtctcgggaggagaatatattcaa
atgtccgggcgtgcaggtagaagaggcttggatgacagaggcatcgtcattatgatgatt
gatgaaaaaatggagccccaagtggccaagggtatggttaaaggtcaagcagacaggcta
gactcggcgttccacttgggttacaatatgattctcaacttgatgcgagtcgaaggcatc
tcgcccgagtatatgttggagagttccttttaccagttccaaaacgcagctagcgtacct
gagttggaaagaaaacaaaatgtgttgaaagcagagattgaagatgtccatattgacgat
gaggcgactgttaaggactactacgaccttctgcagcagctagacaagtacaatgctgat
ttgagaaaagtcatcactcacccggggcatatcctcccttttatccaggacggtagagta
gtaaagatcaaaattggacaagacgattatgggtgggggatggttaccaactttgccaag
agacaaccgggaagattccaaaaacaagaattcacagcgcacgagtcgtatgtggtgaat
gtgtttgtttgcaccatgtttgttgactctccagttaacctcatcaaacctttcaatcct
gttctcccatcgggtatcagaccagcaggtcccggggaaaaggcaagagccgagtttatt
ccaataactttggactcgattgaaaaaatcagtagtgtgcggttaaaagtccccgacgat
tacaagagtgcccaggcaaagagaacattggtgaaaacaatgaaggacctccccaagagg
ctcaaagatgggatccccttgatggaccccgttgccagcatgaaaatcgatgatgacgat
ttcaagaccttgttgagaaagattgacgtgattgagtcgaaactatcgagcaaccccttg
cacgacacggctaggttaccggacttgtacaagaagtactcgcacaaggccgagattgaa
aaaagattgaaggatttgctggcgaaaattctagaagccgaggccgtgatacagctcgat
gatctccggcatagaaaaagagtgttgcgtagattggggttcacgactcaaaatgacatt
attgagttgaagggaagagtagcgtgtgaaatcagcacgggagatgagcttctcttgacc
gagctcatctttaatggtaacttcaacgacctatcaagcgagcaagcagcggctttgctt
tcgtgttttgttttccaagaacgagccaaagaatcgcctcgcttgaaaccagaattggcc
gagcctttaaaatcaatgcaagaaatggcatccaagattgccaaagtatcgcgagaatgc
aagattgatatcctcgagaaggactatgttgagtcgtttagacccgagctcatggaagtg
gtctttgcgtggtgcaagggtgctacatttacgcaaatctgcaagatgactgacgtttac
gaaggttctttgattcgaatgtttagaaggttagaagagttgatccgccagttagcccag
gccgccaaggctataggaaataatcaactccaagagaagatggaaaggctgttggagttg
gtccatagagacatagtttctgctggatccttgtacttgtaa
DBGET
integrated database retrieval system
