Lentilactobacillus buchneri NRRL B-30929: Lbuc_0730
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Entry
Lbuc_0730 CDS
T01477
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lbh
Lentilactobacillus buchneri NRRL B-30929
Pathway
lbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lbuc_0730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbh03019
]
Lbuc_0730
Messenger RNA biogenesis [BR:
lbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Lbuc_0730
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AEB72994
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All DBs
Position
complement(777002..778687)
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AA seq
561 aa
AA seq
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MKKLNVKNNEAAIYGVGGLGEIGKNTYGIQFQDEIILIDAGIKFPEDDLLGVDYVIPDYQ
YLVENKDKIKALVITHGHEDHIGGVPYLMKVLNVPIYAGPLAMALIKNKLEEHGLLNSVE
LHEISDKSVLKFRKMKVSFFRTTHSIPDTVGIAVHTPVGVIVETGDYKFDLTPVTNQPPD
LQEMARLGAEGVLCLMSDSTNAEKPIWTKSEKWVGTSIAHIFDNIEDRIIFATFASNISR
IKTACDNAMAHGRKIAVFGRSMDAAIVNGRELGYLDIPDDAFVDAHELQSLPANKTLILC
TGSQGEPMAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTTSVNSVINKLEEAGANVIH
GRVNNIHTSGHGGQEEQKLMLRLMKPKFFMPIHGEYRMLKIHTELAEQCGVPLDHSFIMQ
NGDVLALSKDNARMAGHFTAGDVYIDGSGIGDVGNVVLRDRQLLSEEGIVVVVATINLAN
QEIQSGPDILSRGFVYMRESGELLDEGRRRVFKTIRKSMRAKKATESSIRNAIIDDLQEF
LYDKTERHPMILPMLIMNGKD
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactaaacgtcaagaataacgaagcagctatctatggcgttggtggtttgggt
gaaatcggtaagaacacttacgggatccagtttcaggatgaaattatcctgattgatgcg
ggaattaagttccccgaagatgatctcttaggtgtcgattatgttatcccagactatcag
tatctggttgaaaataaggataagatcaaagctttggtcatcacccatggtcatgaagat
catattggtggtgtcccgtatttgatgaaggttttaaacgtccctatttatgccggacca
cttgcgatggcgctgattaagaataaattggaagaacacggcttgctaaattctgtagaa
ttacacgaaattagtgacaagtcggttctcaagttccgaaaaatgaaagtttcattcttc
agaaccacccactcgatccctgatacggttggaattgccgttcatacaccggtgggcgtg
attgtggaaactggtgattacaagttcgacctcacaccagtgaccaaccagccgcctgat
cttcaggaaatggcccgtttgggtgcagaaggcgtcctttgtttgatgtctgacagcacc
aacgctgaaaagccaatttggaccaaatctgaaaagtgggttggaacttcaattgcccac
atttttgataatattgaagacagaatcatctttgcaaccttcgcttccaacatttcacgg
attaaaaccgcttgtgataatgccatggcccacggtcgcaagattgccgtctttgggcgc
agcatggatgcagcgatagtgaatggacgcgaattaggttatctcgatattcctgatgat
gcgtttgttgatgcacacgagctgcagtcactgccagctaacaagactttgatcttgtgt
accggctctcaaggtgaaccaatggctgccctttcacggattgccaacggtacccaccgc
cagatttcaattcagcctggtgacacggttatcttttcaagtaaccccattcctggtaac
acgaccagtgtcaacagcgtcatcaacaagcttgaagaagccggcgccaatgtcattcac
ggtcgggtgaacaacattcatacttccggacatggtggtcaagaagaacagaaattgatg
ctgcgcttgatgaagccgaagttcttcatgccgattcatggtgagtacagaatgctgaaa
attcatactgagcttgccgaacaatgtggcgtgccgcttgatcacagctttatcatgcaa
aatggtgatgtacttgccctttcaaaagataatgctcgtatggctggtcacttcactgcc
ggagatgtttacatcgatggtagcggcatcggtgatgttggcaacgttgtcttgcgcgat
cgtcaactgctttctgaggaaggtattgtcgtggttgttgcaacaatcaacttggccaac
caggaaatccaatccggtccagatatcttgtcacgtggcttcgtctacatgcgagaatcc
ggtgaacttttggatgaaggccgacgccgtgtatttaagaccattcgaaagtcgatgcgt
gctaaaaaagcaaccgagtcttcaattagaaatgcgattattgatgatcttcaagaattc
ctttacgacaagaccgaacgccatccaatgattttgccaatgctcatcatgaatggtaaa
gattaa
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