Lentilactobacillus buchneri NRRL B-30929: Lbuc_1577
Help
Entry
Lbuc_1577 CDS
T01477
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbh
Lentilactobacillus buchneri NRRL B-30929
Pathway
lbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lbuc_1577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbh03019
]
Lbuc_1577
03009 Ribosome biogenesis [BR:
lbh03009
]
Lbuc_1577
Enzymes [BR:
lbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lbuc_1577
Messenger RNA biogenesis [BR:
lbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lbuc_1577
Ribosome biogenesis [BR:
lbh03009
]
Prokaryotic type
rRNA helicases
Lbuc_1577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AEB73826
LinkDB
All DBs
Position
complement(1619639..1621159)
Genome browser
AA seq
506 aa
AA seq
DB search
MKFSELGLSDHLLTAINNSGFEEATPIQGETIPMVLKGEDVIGQAQTGTGKTAAFGLPIL
QKIDFDNPNVQALIISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQINALKGHP
QIVVGTPGRILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKERQTLLF
SATMPAQIKRVGVQFMRDPHQVTIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPE
VTIVFCRTKRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILVATDVAA
RGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREIEKLTKV
RMLPLKPPTIQEAFVGQLNSAESDIADLIKKTNTDKYEKMADKLLDEYEATDLVAALLND
VTRDNVKVKITPERPLPHHGHGHGGHRNDRRGGGHGGHYKGSKSHRNGDRNNGSRNRGHY
EGSNDRKHSDRRSSSNKKRRFTIKNS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggattatcagaccacttattaactgcgattaataacagtggg
tttgaagaagctacgccaatccagggcgaaaccatcccaatggttcttaaaggtgaggat
gttatcggtcaagctcaaactggaactggaaaaactgccgcatttggtttaccaatctta
cagaagattgattttgacaatccaaatgtccaagctctgatcatttcaccaactcgggag
ctggcaatccagacacaagaagaaatctatcgattaggaaaagatgaaaaagctaaggtt
caagttgtttatggtggtgcagatattcgccgtcaaatcaacgccttaaagggtcatcca
cagattgtggttggaactccgggccgaattcttgatcatattagacgccatactttaaag
ttagagcacgttaagacattagtgttggatgaagctgatgagatgttgaacatgggattt
ttagacgatattgaagatatcatcaaacaaaccccaaaggaacgtcaaactttgcttttc
tcagcaacgatgcctgcccaaatcaaacgggttggggttcagtttatgcgtgaccctcat
caagtaacgattaaggctaaagaattaaccactgatttaattgatcagtactatgttcgg
gtaaaagaatacgaaaaatttgacaccatgacccgtttctttgacgttcaggatccagaa
gtcaccattgtcttctgtcggactaagcgtcgggttgatgaagtctccaaaggactccag
gcccgtggctacaaggctgccggtcttcacggagatctgactcaggctcgtcggactcag
atcatgcaggaattcaaagctgccaagattgatatcttagttgccactgatgttgctgcc
cgtggaattgatatttcaggtgtgacccacgtttataactacgatattcctcaagatcct
gatggctacgtccatcgtgttggtcgtaccggccgtgccggtaagcatggggtttcaatt
acctttgcaacgcctaatgaaatggattatcttcgagaaatcgaaaagttgaccaaggtg
cgtatgctgcctttgaagccaccaacaattcaagaagcctttgttggtcaattgaattct
gctgaatcagatattgccgacttaattaagaagacgaatactgacaagtatgagaagatg
gctgacaagctgctcgacgagtatgaagcaactgatttggttgctgctctgctcaacgac
gttactcgcgacaacgttaaggttaagattacccctgaacgcccattaccacatcatggt
catggacacggtggtcatcgcaacgatcgtcgtggtggcggtcatggtggtcattacaag
ggctcaaagagtcatcgtaatggcgaccggaataatggcagccgaaatcggggccattat
gaaggcagtaacgaccgtaagcattctgacagacggtcatcaagcaataagaaacgccgt
tttaccattaaaaatagttaa
DBGET
integrated database retrieval system
