Leptospira biflexa serovar Patoc Patoc 1 (Paris): LEPBI_I1823
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Entry
LEPBI_I1823 CDS
T00693
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor (TRCF; ATP-dependent helicase Mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lbi
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Pathway
lbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LEPBI_I1823 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbi03400
]
LEPBI_I1823 (mfd)
Enzymes [BR:
lbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LEPBI_I1823 (mfd)
DNA repair and recombination proteins [BR:
lbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LEPBI_I1823 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Chordopox_A33R
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABZ97929
UniProt:
B0SS39
LinkDB
All DBs
Position
I:complement(1906326..1909748)
Genome browser
AA seq
1140 aa
AA seq
DB search
MTKDIQIRPFQAKDVFKEAKETLVNLSGIPESAHSFVTSTLYGNKLTKKTFVVVLPTNQE
AESFCRELLSFLNKEEIYFFPGPENIPYEYTKWQVEWKRDRILTINQILAGNRSLVVTSV
AAFLRKLPEKESLKGKSITLKLGVDFPLEALLVELIQLGYHREEVCEQFGHFSLKGGILD
IYTPYLTNPVRIDFFGDTVDEIRTFDPNTQKSIQKIDEVLITAANETIVTKSELEHYHNL
LNEYSEKRLPIDSEIEIIEEHLPLVRKQEGFLDFFPEPPVLIFPKFQETKERSFGMEREY
NTLFEKKKEESLCLPPTELLSFGMEWKSLTSEETPGIQFSLLPSLLNNFSFDPITEVKGF
RGKIREAKEYFLELLALNPGHSIFITSSFSAQMMRLKGLFSETEVNTIGENSEDPIRFPF
ESIQPGIHLILSDLKRGFHLVNEGIFVFTDNDLFGRQYKRKTRYKKQSSQMIESFIDLKE
GDYVVHVNHGVGRFVKIERTKADGKERDFLKLEYAGGDSLFVPLDQISLVQKYIGGTDSP
KLDTLGKNSWKKAKERVQESVDKLAEELVLLYSNRLKLNGFAFPPDTIWQEEFEAAFEFE
ETPDQISAIEAVKLDLESSRPMDRLVCGDVGYGKTEVAIRAAFKVIMAGKQVMLLTPTTI
LSLQHFNTFKQRYENYPIKIAFVSRFRSPAEIREDLKNFTEGKIDMLIGTHAILSSKVKP
KNLGLLIIDEEQKFGVTHKESIKKFKNLVDVLTLTATPIPRTLHMALTGIRELSIISTAP
KNRQSVETYVLEEDDTLIQEAIRKEIERGGQVFYLYNRVESIEEEASYVRSLVPEVSVGI
LHGQLTEDEIEETLVEFYERKYDILVTTTIIESGIDMPNVNTLIVKKADMFGLSQLYQIR
GRVGRSDRKAYAYMFYPSKKLMTELAEKRLNTIFEYQELGSGFKVAMRDLEIRGAGNLLG
KEQSGDIMEVGFDLYVKMLEESISRIKGEEVRVEVRTAVNLKTNFYLPDDYIPDTKQKIE
FYKRFEGSANLDEIEELALEMEDRFGELPQIANTFVELEKIRTLASNLGFEFVTEKPEEI
LFKCGTYFRGNPDRVIQAMAQFKGLLISPSEPSVLRYTNLEKDDLKKIKKLLAILEFLAA
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagacattcaaattagacccttccaagcaaaagacgtttttaaagaagctaaa
gaaacactcgtaaaccttagtgggattccagagtcagcacattcttttgtgacaagtact
ttatacggaaacaaactcacaaaaaaaacatttgttgtcgtactcccaacgaaccaagaa
gcagaaagtttttgtcgtgaacttcttagttttttaaacaaggaagaaatttattttttt
ccaggcccagaaaatattccttatgaatatacaaaatggcaggtagagtggaaacgagat
cgaatcctaacaatcaatcaaatccttgctgggaatcgtagtttagttgtgacttctgtc
gctgcttttttaaggaagttgccagagaaggaaagtttaaaaggaaaatccattacacta
aagttaggtgttgattttcctttagaagctttattggttgaactcattcaacttggctac
caccgagaagaagtttgcgaacaatttggtcattttagtttaaaaggtggtattttagat
atttatactccttatcttacaaaccctgttcgtattgatttttttggagataccgttgat
gaaattagaacctttgatcccaacactcaaaaatcaattcaaaaaatagatgaagtcctc
atcaccgctgcaaacgaaaccatcgtcacaaaatcagaattagaacattaccataatctc
ctcaatgaatattcggagaaacgtcttccaattgattctgaaatcgaaatcatcgaagaa
caccttccgctcgttcgtaaacaagaaggttttttggatttttttcccgaacctccagtt
cttatttttcccaaattccaagaaactaaagaacgctcctttggaatggaaagggaatac
aatactctttttgaaaagaaaaaagaagagtcactttgtttaccaccaactgaattgtta
tcgttcggaatggaatggaagtctttgacatcggaggagacacctggcattcagttttcc
ctcctgccaagtctcctaaataatttttcctttgatcccatcacggaggtgaaaggattt
cgcgggaaaatccgagaagcaaaggaatactttcttgagttactagccttaaatcccggt
cactccatcttcatcacttcatcgttttcggctcagatgatgcgactcaaaggattgttt
tctgaaaccgaagtgaatacaatcggtgaaaactcagaagatccaatccgctttccattt
gaatccattcaaccaggcatccatttgattctttctgatttgaaacgtgggttccattta
gtaaatgaagggatttttgtattcacggataatgatttatttggacgtcaatacaaacgg
aaaactcgttataaaaaacaatcctctcagatgatcgaatccttcatcgatctaaaagaa
ggagattatgttgtacatgtcaatcatggtgtgggtcgttttgtcaaaattgaacgaacc
aaagctgatggaaaagaaagggattttcttaaattagaatatgcagggggagatagttta
tttgttcccttagaccaaatttcacttgttcaaaaatacatcggcggaactgattcaccg
aaattagacacactcggtaaaaattcctggaaaaaggcaaaagaacgtgtccaagaatca
gttgataaacttgccgaagaacttgtgttactctattcgaatcgtttgaagttaaatggt
tttgcttttcctccagatacgatttggcaagaagaatttgaagcagcatttgaatttgaa
gaaactcccgatcaaatctctgccattgaagcagtcaaactagacttagaatcttccaga
ccaatggatcgtcttgtttgtggggatgtgggatacggaaaaacagaagttgccatcaga
gcagcatttaaggtaatcatggcgggtaaacaagtgatgttactcacaccaactaccatc
ctatcgctccaacattttaatacattcaaacagagatatgaaaattatccgatcaaaatt
gcctttgtatctcgatttcgatcacctgcagaaattcgcgaagatttaaaaaattttaca
gaaggtaaaattgacatgctcattggtacgcatgcgattttgtcttccaaagtaaaacca
aaaaatttaggcctccttatcatagacgaagaacaaaagtttggtgttacacataaagaa
tctatcaaaaaattcaaaaatcttgtggatgttttaactcttactgcaacgcccatccca
agaactttacacatggcacttacagggatccgtgagttatcaattatttctactgcacct
aaaaatagacaaagtgttgaaacgtatgttttagaagaggatgatacactcatccaagaa
gcaatccgtaaagaaatagaacgtggtggccaagtgttttatctttacaaccgtgtagag
tcgattgaagaggaggcatcctatgtccgatctcttgttccggaagtttctgttggaatc
ctccacgggcaattgacagaagatgaaattgaagaaacgttagttgaattttatgaacgt
aaatacgatatccttgtgactacgaccatcattgagtcggggattgatatgccaaatgtg
aataccctcattgtcaaaaaagcagatatgtttggtttgtctcaattgtaccaaattcgg
ggccgtgtgggaaggtctgatcgaaaagcatatgcttatatgttttacccatctaagaag
ctgatgaccgaacttgccgaaaaacgtttgaataccatcttcgaatatcaggaattaggt
tctggatttaaagtggcgatgcgtgacttggaaattcggggtgcaggaaatcttctgggt
aaagagcagtcaggagacatcatggaagtggggtttgatctttatgttaaaatgttagaa
gaatccatttctcgaatcaaaggggaggaggttcgagtcgaggttcgaactgccgtgaat
ttaaaaaccaatttttatcttcctgatgactacatcccagataccaaacaaaaaattgaa
ttttacaaacgttttgaaggttccgctaatttggacgaaatcgaagaactggctcttgag
atggaagatcggtttggtgaactgccacagatagccaatacctttgtagaattggaaaaa
atccggactcttgcatccaatttaggttttgaatttgtgactgaaaaaccagaggaaatt
ttgtttaagtgtggtacatacttccgaggaaatccggaccgtgtgatccaggcgatggct
caattcaaaggcctattgatatctccttcagaaccatctgtccttcgttatacgaaccta
gaaaaagatgatcttaaaaaaataaaaaaactgctagcgattttggagtttttggccgct
taa
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