Leptospira biflexa serovar Patoc Patoc 1 (Paris): LEPBI_I1971
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Entry
LEPBI_I1971 CDS
T00693
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lbi
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Pathway
lbi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LEPBI_I1971 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbi03021
]
LEPBI_I1971 (rpoC)
03400 DNA repair and recombination proteins [BR:
lbi03400
]
LEPBI_I1971 (rpoC)
Enzymes [BR:
lbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LEPBI_I1971 (rpoC)
Transcription machinery [BR:
lbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LEPBI_I1971 (rpoC)
DNA repair and recombination proteins [BR:
lbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LEPBI_I1971 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABZ98073
UniProt:
B0SSI3
LinkDB
All DBs
Position
I:complement(2046300..2050601)
Genome browser
AA seq
1433 aa
AA seq
DB search
MRNYNSFESITIRLASPERIKEWSFGEVKKPETINYRTLKPERDGLFCEKIFGTTKDWEC
YCGKFKSIRYKGVVCDKCGVEVTHSKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDM
TINQLKSVLYFEKYVIIDPADSGRNRGELIDEDEYHNYLDEYGDKFIAGIGGDAIKELLA
RIDVDAEARVIRQKIQDKNKISDKRIFKRLEVLEAFRDSGNRPEWMVLDVVPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLALKAPEIIVRNEKRMLQEAVGALFDNSR
RKRTVKGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHQMGLPKK
MALELFKPFIMKRLVDLELAPNIKSAKKKIEAEDKEVFDVLETVVKEHPVLLNRAPTLHR
LGIQAFLPVLVEGKAIKLHPLVCHAFNADFDGDQMAIHVPLAPKAQLETWMLMLSPHNIL
NPANGQPICGPTQDIVLGIYYLTSEVKDAKGEGKFFTGLEEVMYAIETKTVEIRSKISVL
HEGKIIETTPGRLIFNQVMPKGYVYINRTLGDKETNKIIADVYEKFGPGITVVMLDEIKR
LGYRYATVFAPTISIDDIRVSPQKEGLVNDANKEVEKADMEYRKGIITNEERRKKVIEIW
TKTNDRITEGMFKELEKDQAGFNPVYVMAASGARGSKQQIRQLAGMRGLMAKPSGEIIEL
AIRSNFREGLGVLEFFISTHGARKGLADTALKTADAGYLTRRLVDISQDVIVSEDDCGTK
ANITLGIVKEGENVIVSLADRVFGRYTAEDLVDPVTEKVVFPKDTLITRALGQQIENLGY
DKIKVRSPLTCRSRHGICTKCYGMDMARLVPAEIGEAVGTIAAQSIGQPGTQLTMRTFHV
GGAASATIQEKEHKVPFRSLVKSINGRLVTNANGSKVFARRGTIIVNRLIQEFNTESLSS
VRIVDGQRLEKGEVFASQVGESIEQRITSDQAGTVSLIGTTLRILGDDIVIPVKIGTILK
SEEGQIVEENKALAEFDPYNEVAVSETAGTIVWEDLEIGKNVRRDVDPKTSNIILKVVEQ
KKDRLVPKVIVGSDGYSVPVDALLQFQNGDKVREGDVIFKIPSVAEKTRDITGGLPRVDE
LFEARRPKDACTLAEIDGKIEDKGEIVKEKRILYILPDSPEQEKVKVAIPIGKQIRVRQG
DFVKRGDQLDEGNFDPHDILAIKGPSALHEYLVSEVQEVYRLQGVHINDKHIEVVVRSML
RKVIITDSGDTSFVNQQQVDKFLFDEENDRVEQEGGSPAQGTPVLLGLTKASLNTESYFS
AASFQETTKVLTDAAIKGKTDNLMGLKENVIIGHMIPAGTGMKKYRDIEVFKEMPGDLDW
DLDSEEEEEELSELSEAAPVSTATLSKLVAEEDEDEDELEEEADDSDDEDDDD
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgagaaattacaatagttttgaatcgattacgatccgtttggcatcacccgagcggatc
aaagagtggtctttcggggaagtcaaaaaaccggaaacgatcaactaccgtaccctaaaa
ccggaacgagatggtcttttctgtgaaaaaatcttcggaaccactaaggattgggaatgt
tactgcggtaaattcaaatccatccgttataagggagtggtttgcgacaaatgtggggta
gaggtcactcactccaaagtgcgtcgtgaaagaatgggccatatcgaacttgcggcacca
gtgtcacacatttggtactaccgttctgttccatctcgtatgggactccttctcgatatg
acgatcaaccaactcaaaagtgtcctttactttgagaagtatgtgatcattgaccctgct
gattccggaaggaacagaggggaactcatcgatgaagatgaataccataattatttagat
gaatacggtgataagtttatcgctgggatcggtggggacgccatcaaagaacttctcgcg
cgtatcgacgtggatgcagaagctcgggtgatccgccaaaagatccaagataaaaacaaa
atctccgacaaacgtattttcaaacgcctagaagttttggaagcgttccgggattccgga
aaccgtcctgaatggatggttctcgatgtagttcctgtgattccaccagaactacgtcca
atggtgcaattagaggggggacgttttgcgacttccgacctaaacgatttgtatcgccgt
gtgatcaaccgtaacaaccgtttgaaacgccttcttgcactcaaagctccagagatcatc
gtacggaacgaaaaacggatgttacaagaagcagtgggtgctctttttgataacagccga
cgcaaacgaactgtgaaaggaaaaggaaatcgaccattaaagtcgatttccgatatgctc
aaaggaaaacagggacgttttcgccaaaacctactcggaaaacgggtggattattctggt
cgttcggtcatcgttgtgggtccagaactcaaataccaccaaatgggacttcctaaaaaa
atggctttggaacttttcaaaccattcattatgaaacgccttgtggatttggagctggca
ccaaacatcaaatctgcgaagaaaaaaatcgaagcagaagacaaagaagtttttgatgta
ttggaaactgtggtgaaagaacaccctgttctcttaaaccgtgctcctacacttcacaga
cttggaatccaagcatttttaccagtccttgtagaaggaaaagcaatcaaactccaccct
ctcgtctgtcacgcgtttaacgccgactttgacggggaccaaatggcaatccacgttccg
ctcgctcctaaagcacagctcgaaacttggatgttaatgttatctccacataacattttg
aatcctgccaatggacagccgatatgcggacctacacaagatatcgttcttggaatttat
tacctcacttcagaagtaaaagacgcgaagggagaaggaaaattcttcacagggcttgaa
gaggttatgtatgcgattgaaacaaaaactgtagaaattcgctccaaaatctctgtttta
cacgaagggaaaatcatcgaaaccacaccgggaaggcttatcttcaaccaagtgatgcca
aaagggtatgtttatatcaacagaaccctcggtgataaagaaacaaacaaaatcattgca
gacgtatacgagaagtttggacctgggatcactgttgtgatgttagatgaaatcaaacgc
ctcggttaccgatacgcgactgtatttgctcctacgatttccattgatgacatccgcgtt
tctcctcaaaaagagggactcgtaaacgatgccaacaaagaagttgaaaaagcggatatg
gagtatcgtaaagggatcatcacaaacgaagaacgtcgtaaaaaggtaattgagatttgg
accaaaaccaatgaccgcattaccgaagggatgtttaaggaactcgaaaaagaccaagcg
ggttttaacccggtatacgtcatggcagcatccggtgcccgtggttcgaaacaacagatc
cgccagcttgcagggatgcgaggtcttatggcgaaaccgtctggggaaatcatcgaactt
gcgattcgttccaacttccgtgaaggccttggggtattagaattttttatctctacacat
ggtgcgaggaaaggtcttgcggatacagcgttaaaaactgccgatgccggttacctcact
cgtcgtcttgtggatatctctcaggacgtgattgtttctgaagatgattgcggaaccaaa
gccaatatcactcttggaatcgtaaaagaaggggaaaacgtgattgtttcccttgcggac
agagtgttcggtcggtatacggcggaagatcttgtggaccctgtgacagaaaaagtggtg
tttccaaaagacactctcatcacaagagcacttggccaacagattgaaaaccttggttac
gataaaatcaaagtaagatcacctctgacttgccgttcacgtcacgggatttgcacaaaa
tgttacggtatggacatggcgcgccttgtgcctgcagagattggggaagcagtgggaacc
attgcggcacaatccatcggccaaccgggaacacagctgacgatgagaaccttccacgtg
ggtggtgcggcatcggctacgatccaagaaaaagaacacaaagttcctttccgatctctt
gtaaaatccattaacggacgtttggtgacaaacgcaaatggatcaaaagtttttgctcgt
cgcggaaccatcattgtcaaccgactcatccaagaattcaatactgaatctttatcgagt
gttcggattgtggatggccaacgtttggaaaaaggggaagtgttcgcgtcacaagtgggt
gaatccatcgaacaacgcatcacttcagaccaagcaggaactgtttccctcatcggaaca
accttacgcattctcggtgatgacattgtcatcccagtcaaaatcggaacgattttaaaa
tcagaagaaggccaaattgtagaggaaaacaaagcactcgctgagtttgacccttacaac
gaagttgctgtctcagaaacggctggaaccattgtttgggaagatttagaaattgggaaa
aacgttcgtcgcgatgtggatccaaaaacttccaatatcattctcaaagtggttgaacag
aaaaaagaccgtctcgttccaaaagtcatcgtaggttccgatgggtattctgttcctgtg
gacgcactcctccaattccaaaatggagacaaggtcagggaaggggatgtgatcttcaaa
atcccatcggtggcagaaaaaactcgtgatatcacgggtggtcttccacgggtcgatgaa
ctttttgaagctcgtcgtcctaaagacgcctgcacacttgccgaaatcgatggtaaaatt
gaagataagggtgaaatcgtaaaagaaaaacggatcctttatatcctaccagattctcca
gaacaggagaaagtaaaagtagcgatcccaatcggaaaacaaatccgtgttcgccaaggt
gactttgtgaaacggggtgaccagttggatgaagggaattttgatccgcatgacatcctt
gcgatcaaagggccaagcgcactccacgaatacttggtatccgaagtgcaagaggtctac
cgtttgcaaggggttcatatcaatgataaacacattgaagtggtggttcgttccatgctt
cgtaaggtgatcatcactgacagtggggacacatccttcgtgaaccaacaacaagtggat
aaattcctctttgatgaagaaaacgacagagtcgaacaagaggggggatctcctgcacaa
ggaactccggttctcctagggcttaccaaagcatccctcaataccgagtcgtatttctct
gcggcttccttccaagaaaccacaaaggttttaacggatgcggccatcaaaggaaaaaca
gacaatctcatgggtctcaaagagaacgtcatcatcggtcatatgatccctgcgggaact
ggtatgaaaaaataccgtgacatcgaagtcttcaaagaaatgcctggggacttagattgg
gatctcgattcagaagaagaggaagaagaactttctgaactttcagaagcagcacctgtt
tcaacggcaactttatccaaactcgtggcagaagaagatgaagatgaagacgaattggaa
gaagaagctgacgattcagatgatgaggacgatgacgattag
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