Leptospira biflexa serovar Patoc Patoc 1 (Paris): LEPBI_I1972
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Entry
LEPBI_I1972 CDS
T00693
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain (RNAP beta subunit; Transcriptase beta chain) (RNA polymerase beta subunit)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lbi
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Pathway
lbi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LEPBI_I1972 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbi03021
]
LEPBI_I1972 (rpoB)
03400 DNA repair and recombination proteins [BR:
lbi03400
]
LEPBI_I1972 (rpoB)
Enzymes [BR:
lbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LEPBI_I1972 (rpoB)
Transcription machinery [BR:
lbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LEPBI_I1972 (rpoB)
DNA repair and recombination proteins [BR:
lbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LEPBI_I1972 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ABZ98074
UniProt:
B0SSI4
LinkDB
All DBs
Position
I:complement(2050616..2054302)
Genome browser
AA seq
1228 aa
AA seq
DB search
MHTRMQIRNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESF
PIESPNNDMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKDTGEIREQVVYM
GDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQVRDTFSARVIPYRGSWLEFEMDN
KGILVAKIDRKKKFPATLLVKAMGMGTNEEVLRLFYGSSKMKIAGANPKDLKRLIGRRTI
ADIINMETGEVMLDAGSKINEDNISILREMKVKEVDVIEFPKGKDNPVLINCLEKDGVND
YEDAVKKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFS
KADDRVLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRV
ERVIKERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLN
ALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPY
RLVKNGKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQ
YMDLAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYD
AGVCIVAKKDGVVSKVDATGVWIKEDQSKEIVHYPLIKFKKTNQGTCFNQKPNVSMLHTT
TGGKVSKVSKERVEVTTPNGEKETHELLLSDEVQFHAVVKEGQEVGIGAPVAGQIIKGEK
YGDFGQILQKGTVLANGPSTDAGYLALGRNVLVAFMPWEGYNFEDAILISERIIKDDVFS
SIHIEEFEIQARETKLGQEQITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTP
KGETDLTPEYKLLHSIFGEKAKEVRDSSLRMPNGFEGTVIDIKRYSRETGDELAAGVEEM
VKVYVARKRKLLVGDKMAGRHGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNL
GQIFETQLGFAAKKLGINFETPVFDGASEGDVNDFCKKAGLPENSKFQLYDGRTGEKFIN
QVFCGYIYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGA
SHTLQELLTIKSDDMLGRARIYEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIIKDSE
GLEVDISDYEDEFSKNKKKIKFETIENV
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgcatacccgaatgcaaattagaaaccgggtaaatttcggtaaaattaccgacctcaat
ttacttcctaatcttatctacgtacagaaaaaatcctttgattggttcctccagtcggaa
gtgaaagatccgacgaaacgtttgaaccaagggttggaagcggtattccgcgaatcattc
ccaatcgaatcaccaaacaacgatatggtcatggaatatggccattacgttttgggagag
ccgaaacgcgatccccaagagtgcaaagacactgattcttcttttgctgttccactgaaa
gcagtcatccgtctcatcatcaaagacaccggtgaaatccgcgaacaagtcgtctacatg
ggtgaccttcctgtgatgacagaccacggaactttcatcatcaatggtgccgaaagggta
gtggtaagccagttacaccgatctcctggtattttcttttcgtatgaccaagtacgagat
acattttctgcccgagtgattccttatcgtggatcatggttagaattcgagatggacaac
aagggaatcctcgttgccaaaatcgaccgtaagaaaaaattcccagcgactctccttgtg
aaagccatgggtatgggaacaaacgaagaagtacttcgccttttctacggatctagcaaa
atgaaaatcgctggtgccaatccaaaagacctcaaacgtctgattggccgccgaaccatt
gcggatattatcaatatggaaaccggtgaggtaatgctcgatgctggttccaaaattaac
gaagacaatatctccatccttcgtgaaatgaaggtaaaagaagtggatgtcatcgaattt
ccaaaaggaaaagacaatccagttctcatcaattgcctagaaaaagacggagtgaacgac
tacgaggatgcagtgaaaaaatttcacacgatcatgcgtccaggggaaccttctacgatt
gaaaacgcggaagctgagttaaaacgcctctttttctctccaaaaacgtttgatttagga
attgttggtcgttacaaaatcaatagcaaattcgagttcaacaatccaaaagaattctca
aaagcagatgatcgggttctccgaaaacaagacatcatcgaaaccgttcgttaccttgtg
atgcttatgtcagaagcggaaaattattacccagatgacattgaccacttaggaaacaga
aggatccgttcggtgggggaactcatcgctaaccaattgaaacttggtttttccagagtg
gaacgagtcatcaaagaaaggatgacagtacaggagccggaacaacaaactcctcagctt
cttatctccatcaaaccaatcacagcagtgatcaatgagttttttggatcttcgcaactc
tctcagtttatggaccaaaccaatcccttggcagaacttacgcacaaacgtaggttaaac
gctcttgggcctggtggactttctcgtgatagagcaggttttgaggttcgtgacgttcat
tattctcactacggtcgtatgtgccccattgaaacaccggaaggtccaaacattggtctc
attctttccatgtctagttttgcacgtgtgaacgattatggattcattgaaactccatac
cgccttgtaaagaatggaaaagtccaaaaacaagtggaatacctcactgcggacaaagaa
gaataccattatatggcgcagtcaaattcgactgtggatgagaagggagaattcacttcc
aaactcatttccactcgtcatagaggggatttccctttccgtagcccagctgaaatccaa
tacatggatcttgctcccttgcaagtggtctcagtttccacagctctcattccgttctta
gaacatgatgacgcgaaccgtgccctcatgggttccaacatgcaacgccaagcggtacca
ctcttaacagaagaggctccttttgtcggaactggtatggaagctcgtgcggcttatgac
gcaggggtttgtatcgttgcgaaaaaagatggtgtggtttccaaagtggatgcaacaggt
gtttggatcaaagaagaccaatccaaagagattgtccattacccactcattaaattcaaa
aaaaccaaccaaggtacttgttttaaccaaaaaccaaacgtatccatgttacacaccaca
actggtggcaaggtaagtaaggtttcgaaagaacgtgtcgaagtgacaactcctaacgga
gaaaaagaaactcatgaacttcttctttctgatgaagttcagttccatgctgttgtcaaa
gaaggacaagaggtaggaattggagctccagttgccggacaaatcatcaaaggggaaaaa
tacggtgacttcggtcagatccttcaaaaaggaactgtcctagccaacgggccatccact
gacgctgggtatttggcacttggacgaaatgttctcgttgcctttatgccttgggaagga
tacaactttgaggatgcgattttaatttctgaacgaatcatcaaagacgatgttttctct
tccatccacattgaagaattcgaaatccaagctcgggaaacgaaactcggacaagaacaa
atcactcgtgacattccaaacctttcggacaaagcgttccgtgatttggatgagtctggt
gtgatccgtgtgggtgcagaggtaaaacctggagacatcctagttgggatggtgactcca
aaaggggaaacagacctcacacctgaatacaaactattacactccatttttggagagaag
gcaaaagaagttagggattcctcactccgtatgccaaacggtttcgaaggaactgtcatc
gatatcaaacgttattcccgtgaaacaggcgatgaactcgctgctggcgtggaagaaatg
gtaaaagtttacgtggctcgcaaacggaaactcctcgtgggtgataagatggccggaaga
cacgggaacaaaggggtcgtagcacgtgtgatggcacaagaagatatgccatacatggaa
gacggatctccagttgacatcgtactcaacccactcggtgttccttcgcgtatgaacctc
ggtcagatctttgaaactcaacttggatttgctgcaaaaaaactagggatcaattttgaa
acccctgtgtttgacggagcttccgaaggtgatgtaaacgatttctgcaaaaaagcagga
ttaccggaaaacagcaaatttcagttatatgatggaaggactggtgaaaaattcatcaac
caagtattctgtggatacatttacatgttgaaactggctcacttggtggatgacaaaatt
cacgcaagatccactggaccttactcactcgtaacacaacaaccactgggtggtaaggcg
cagttcgggggacaaaggttaggggagatggaagtttgggcactcgaagcatacggtgcc
tcacacaccttacaagaattactgaccatcaagtcagatgacatgctcggacgtgccaga
atttacgaagcaattgtgaaagggatccactcgatcaaaccgggtatccctgaatccttc
aacgttcttgtacaagaactccgaggtctcgcacttgatatcatcatcaaagactccgaa
ggattggaagtggatatctctgattacgaagatgagttctcgaaaaacaaaaagaaaatt
aaattcgagaccattgaaaacgtttag
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integrated database retrieval system
