Leptospira biflexa serovar Patoc Patoc 1 (Paris): LEPBI_II0208
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Entry
LEPBI_II0208 CDS
T00693
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD-box family (DeaD)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbi
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Pathway
lbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEPBI_II0208 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbi03019
]
LEPBI_II0208 (deaD)
03009 Ribosome biogenesis [BR:
lbi03009
]
LEPBI_II0208 (deaD)
Enzymes [BR:
lbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LEPBI_II0208 (deaD)
Messenger RNA biogenesis [BR:
lbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LEPBI_II0208 (deaD)
Ribosome biogenesis [BR:
lbi03009
]
Prokaryotic type
rRNA helicases
LEPBI_II0208 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Helicase_RecD
AAA_19
Cas3-like_C_2
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABZ99741
UniProt:
B0SU57
LinkDB
All DBs
Position
II:209193..210797
Genome browser
AA seq
534 aa
AA seq
DB search
MYPISMTKNDTEVGNDFQSFGLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQ
TGTGKTAAYGLPCLNRIKVEDGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGS
SYSKQITQVAKGAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESI
FNLLPTKRQTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAERE
IAVVRILDYENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHD
GRVKILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRE
SRALLRLKGTSGTNLTIAALPTKKEVHLSREEDFLKKVVDTEIHADAEAVLEKLLKLEDK
RSIALKLLSKMLDNTKISGPEKIGKTPAEWSEMPPGGGSGGRRRRDDGGGSGGGRGGYRG
ARSNSDRSERSDRGDRKERGGESSSRRASTPASKKEGGVYVKAAGKKTQRFRNK
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
ttgtatcctatttccatgactaagaatgacaccgaagttggaaatgacttccaatccttc
ggattacgtcctgaaatactacaaggaatcactgaagcaggcttcgaatcaccaagccct
atccaaaaacaagcgattccgctcgtattggaaggaaaagatttaatcgcacaagcgcag
accggtaccggaaaaactgcagcttacggactcccctgtttgaaccgaatcaaagtggaa
gatggcatgcaagtgcttgtcctcacacccactcgggaacttgcattgcaagtatcagat
gaattgttcaaattgggaaaacatttaggaatcaaaaccaccacgatttacggtggaagt
tcctattctaaacaaatcactcaagtggcaaaaggtgcccaagttgctgttgcaactcct
ggcagactccttgacctattaaaaggtaaggaacttaaaaatttcaaaccatcaatggtg
attttagacgaagcagatgaaatgcttgatatgggatttatggatgatatcgaatccatc
tttaacttacttcccaccaaacgccaaacattattattttctgcaacaatgcccgaacca
attaaaaaattggcgagtaaataccaaacgcacccagctcacgtaaagattgctgccaca
gaaaaatcttctaaaaacatcgaacaagtgtactacataatcgatgaagcagaacgagaa
attgctgtcgtacgaattttggattatgaaaacccttttaaggcaatcatctttaccaaa
acgaaaaaagaagcagatgatctcaaatcaaccttaagtttcaaaggatatccggtagag
gctcttcacggagacctaaaccaaaaacaaagagaacaagttttaaaaagcctacatgat
ggccgagtcaaaatcctcgtggcgacagatgttgcggcacgcggactcgatgtaaaagat
ttgtctcttgtgatcaactaccaccttccttttgatagcgaaagttatacgcaccgtatt
ggtcgtactggccgcgctggaaagtcagggaaagctgtgactcttgtcacaacaagagaa
tcaagagcccttctacgactcaaagggacttcgggaaccaacttaacgattgctgccctt
ccaacaaaaaaagaagtacacctaagtcgtgaagaggactttttaaagaaagttgtagat
accgaaatccatgcagatgcggaagcagtgttggaaaaacttttgaagttagaggacaaa
cgttcgattgctttaaaactcctttccaaaatgctcgacaataccaaaatcagcgggcct
gaaaaaattggaaaaaccccagccgaatggagcgaaatgcctcctggtggtggatctggt
ggaagacgccgtcgtgatgatgggggcggatcaggtggtggtcgcggtggttaccgtggc
gctcggtccaatagtgatcgcagtgaacgtagtgaccgcggagacagaaaagaacgtggt
ggagaaagtagtagtcgccgtgcgagcaccccagcttctaaaaaagaaggtggagtgtat
gtgaaagcggctgggaaaaaaactcagcgttttcgaaacaagtag
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