Leptospira borgpetersenii JB197: LBJ_0225
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Entry
LBJ_0225 CDS
T00404
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase (superfamily II)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbj
Leptospira borgpetersenii JB197
Pathway
lbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBJ_0225 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbj03019
]
LBJ_0225 (srmB)
03009 Ribosome biogenesis [BR:
lbj03009
]
LBJ_0225 (srmB)
Enzymes [BR:
lbj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBJ_0225 (srmB)
Messenger RNA biogenesis [BR:
lbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBJ_0225 (srmB)
Ribosome biogenesis [BR:
lbj03009
]
Prokaryotic type
rRNA helicases
LBJ_0225 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
CMS1
Cas3-like_C_2
NAT10_TcmA_helicase
P-loop_SecA
AAA_22
MtrA
Motif
Other DBs
NCBI-ProteinID:
ABJ74961
UniProt:
Q04VV9
LinkDB
All DBs
Position
1:complement(259462..261003)
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AA seq
513 aa
AA seq
DB search
MKKLKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAI
PAIELLEVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKAL
RKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQ
TIMFSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEY
RNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVAT
DVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIER
INGIKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLMGDDYTALDIAA
ALFKMTILRDSVTFDDSVQFESNFKYEERNSFKKKPGKYRDRNFGRSGSGARTKSNPGSH
SGNSSGNGSHSKFSKGDKNQKSGGLSSFKKKKK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactcaagtttagcgaactaaacttatccgccgaaattcaaaacgccattctg
gaaatgggctttgaagaagcctctcccattcaatccgaagcgattccagtcatattaaaa
ggaaaagatatcatcggacacgctcaaactggtaccggtaaaacggccgcatttgcaatt
cccgcgattgaacttctcgaggtggaaagtaaacatttacaagccttaattctttgtccg
actagagagttagtcatccaagttagtgaacaatttcgtaaactgatgaaatacaaagga
aacttcgaagtcgtccctgtttatggcggtcaagaaatagaaagacaactcaaggcgctt
cgtaaaaatccccagatcgtaattgcaactcccggaagaatgatggaccacatgagaaga
ggctctatccgtctcaacgacattaagatcgtggtcctggacgaagccgacgaaatgctg
gatatgggtttccgcgaagacatggaattcattctaaaagatacccccatagatcgccag
acgatcatgttttccgctacgatgacggaagatattctgaccttgatgaaaagatttcaa
aagcatcctcaaatcatcgacgtaactcatcaaaaattgagcgcaccaaaaatcgaacaa
atctactacgaaattcaagagaacgccaaaggagaagctctcgcgagattgatcgaatac
agaaacgtaaaactcgcattagtattttgtaatacaaaagcgcaagtggataccgtcgta
gaattgttgaaatcgagggggtactttgcggaagcacttcacggagatctgaatcagaaa
caaagggacaaagtgatgaatggatttcgaaacggaaatatcgaaatcttagtcgcgacc
gacgtggccggaaggggaatcgacgtcaacaatgtagaggcggtattcaactacgacctt
ccaagagacggggaagactacgtccacagaatcggaagaacgggaagagccggaaaaaaa
gggattgcgttttcctttatcgtcggaaaacagatctacaatcttaaaaaaatagaacgg
atcaacggaatcaaaatcgaggcaggaaaaattccaacgttagacgatctcgaagaaacc
aaaatccattcttacacttccaaagtcaggtccatcgtggatgcgggccatatcggcaag
tatgtaaatcaagtggaaaaattaatgggagacgattataccgcattggatatcgccgcc
gctttgtttaaaatgactattcttagggatagcgttactttcgatgactctgtacaattc
gaatcaaattttaaatacgaagaaagaaattccttcaaaaagaaacccggaaaatacaga
gatcggaattttggaagatccggttcgggagcgagaaccaaatcaaatccgggttcacat
tccggcaacagttccggtaacggatctcattctaaattctctaaaggagataaaaatcaa
aaatcaggcggattatcttctttcaaaaaaaagaagaaataa
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