Leptospira borgpetersenii L550: LBL_1601
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Entry
LBL_1601 CDS
T00405
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
KO
K03086
RNA polymerase primary sigma factor
Organism
lbl
Leptospira borgpetersenii L550
Pathway
lbl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lbl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LBL_1601 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbl03021
]
LBL_1601 (rpoD)
Transcription machinery [BR:
lbl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LBL_1601 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Exonuc_VII_L
ATG17_like
TMPIT
COG3_N
Bacillus_HBL
Motif
Other DBs
NCBI-ProteinID:
ABJ79060
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Position
1:1875873..1877630
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AA seq
585 aa
AA seq
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MENLQSMPEVQKIISLGKANGEVSYDDINEILPDKILNSEKIDDFFTLLHEMGIEIVEEY
TRNTLEPASTLVPKDDSKPARKKKESSASASGSEDPIKLYLREIGKVSLISGETEVFLAK
RIEKGEKIIEETILSSSILRANYIKLLPKIRSKKIKVYDLIRVDKMYALNAEEAHKLEEL
FFKNILVIQEQEKVLQEAVSKIRKYSETSKKFKEFKEKIDASTEIIHNAIQELGVSQKEI
QKISQKIKSMVFRIKEIDRHFLKIKAQYGQDVRDIKAFNRFIEKNEKLDDIEVKMGVNID
EVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQAKKELVKANLRLVV
SIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQAR
TIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLE
IPVGSEEDSELGDFIPDTEVETPVNTAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDG
YPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYIDG
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatctgcaaagcatgcctgaggttcagaagattatatctcttggaaaggcaaac
ggagaagtttcttatgatgatatcaacgagatacttcccgacaaaattctgaactcagaa
aagatagacgatttttttaccctattacacgaaatggggatcgaaatcgtggaagaatat
accagaaatactctggaacccgcttccactcttgttcctaaagacgattccaaaccggcg
agaaagaaaaaagaatcctccgcgtccgcgagcggttccgaagatccgatcaaactttat
ttaagagaaatcggaaaggtaagtctgatctccggtgaaaccgaggtctttcttgcaaaa
agaatagagaagggcgagaagatcatcgaagagacgattcttagttcttctattctcaga
gcgaactacattaaacttttaccgaagatccgcagcaagaagatcaaagtttacgatctg
attcgtgtcgataaaatgtatgctttaaatgcggaagaagcccataagcttgaggaatta
tttttcaaaaatattctagtaatccaagaacaggaaaaggttcttcaggaagccgtttcc
aaaattcgaaagtattctgaaacttccaaaaaattcaaagagtttaaagagaaaatagac
gcttctacggaaatcattcataacgcgatccaagaactcggagtttcccaaaaagagatt
caaaaaatttcccaaaaaatcaagtccatggtttttagaatcaaggaaatcgatcgccac
tttttgaaaatcaaggctcagtatggccaggacgttcgggatatcaaggcgttcaacaga
tttatcgaaaagaacgagaagttagacgacatcgaagtcaagatgggagttaacatcgat
gaagttcgagaggtcatcaaagacattcgaaacaacgaaagaaaacttcgtcgtatggaa
caggaagcggggtccacagttcaagaaatcaaggattggggcgaaaagattattaaaggt
gaaagggaaatctcccaggctaaaaaggaactcgttaaggcaaatctccgactcgtagtt
tccatagcgaaacgttatgcgaaccgtggaatgcacttctttgatttgatccaggaagga
aacattggccttattaaagcggtagataagtttgagtataagaaaggttataagttttcc
acatacgcaacttggtggatccgtcaagcgatcacaagagctatttccgatcaagctaga
acgatccgcgttccagtccatatgatcgaacaagtcaataaggtgattcgtgaaaccaga
ttattcattcaagagttcggacgcgatccaaacaatgaagaaattgcggaaagactcggt
tggccggttcaaaaagtaaagatggtcaaaaatgttgctagagaaccgatctctcttgaa
attcccgtcggttcggaagaggattcagaactcggtgattttattccggatacggaagtg
gaaactcctgtgaataccgccgcgtctagtatccttgcggagcagatccgtcaggtactt
catactttgcccgcacgggaacaaaaagtgatccgtatgcgtttcggcttagacgacggt
tatcctcaaactctggaagaagtcggttatcaatttaaagttacgagagagagaatccgt
cagatcgaagcaaaagcgcttagaagactcaggcacccatctcgttctaagaagttgaag
gattatatcgacggttga
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