Bombilactobacillus bombi: DS830_00355
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Entry
DS830_00355 CDS
T06522
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbm
Bombilactobacillus bombi
Pathway
lbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DS830_00355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbm03019
]
DS830_00355
03009 Ribosome biogenesis [BR:
lbm03009
]
DS830_00355
Enzymes [BR:
lbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DS830_00355
Messenger RNA biogenesis [BR:
lbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DS830_00355
Ribosome biogenesis [BR:
lbm03009
]
Prokaryotic type
rRNA helicases
DS830_00355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AXX64053
LinkDB
All DBs
Position
82815..84326
Genome browser
AA seq
503 aa
AA seq
DB search
MKFNELNLDDSLLSAVTDAGFSEATPIQAQTIPLVLSGVDVIGQAQTGTGKTASFGLPIL
QEIDVQNPNIQALIISPTRELAVQTQEELQRLGKYRHSKVIAVYGGSDIRRQIKQLHAHP
QVVVGTPGRLLDHIKRHTLKLEHVQKVVLDEADEMLDMGFVEDIESILENVPSEHQTLLY
SATMPKPIMRIAEKFMHEPKIVKIKSKELTADKIEQYMVRSKEYEKFNTMTRLFDVQKPE
LALIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLHQFKTGKLTYLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVSPNEMSYLRGIEQLTNV
RMLPLKPPTDAEALTGQLEAAKQEIAQQATNNKLDKFAPAAQELLEEYDPLVLAQLLLKN
LSKDPEAIPVKITPERPLPSRHSRGDNRSNRGHGRGGHHNYRSDRRGGNNRNSNHGASRD
NSHGRANHSTQRRRRNYTVRTKD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaacgaacttaatttagatgatagtctgctttcagcagtaactgacgcaggc
tttagtgaagcaacaccaattcaagcccagacaattccgttagtattgtcgggtgtagat
gtgattggacaagcccaaacaggtacagggaaaactgcctcatttggtttaccgatatta
caagaaattgatgtccaaaatcccaatattcaagccttaattatttcacccacacgtgaa
ttagctgtacaaacacaagaagaattacagcgattaggtaaatatcggcattcaaaagtt
attgcagtttatggtggttctgatattcgccggcagattaaacagttgcatgcgcatccg
caagtggttgtgggaactcccggacgtttattagatcatattaagcgccatactttaaaa
ttggaacatgttcaaaaggtagttttggatgaagctgatgaaatgttggatatgggattt
gtagaagacattgaaagcattctagaaaatgtgccttcagaacatcagactttactttat
tcagcaacaatgcctaagccaatcatgcggattgcagagaaatttatgcatgaacccaag
attgttaaaataaaatctaaagaattaacagctgataagattgaacagtatatggttcgt
tccaaagaatatgaaaagtttaataccatgacacggttatttgatgttcaaaagcctgaa
ttagccttgatttttggccgtactaagcgacgagttgatgaattaacacgtggtttaaag
gcacgcggatataacgctgaaggcattcatggagatttgtctcagcaaaaacggatgagt
gttttacatcaattcaaaacaggaaaattaacctatttggttgctactgatgtagctgca
cgtggtttagacatatctggggttagtcatgtttataattatgatattcctcaagatcct
gatagttatgttcatcggattgggagaacaggacgtgcaggccattcaggtgtttctgta
acgtttgtttcacctaatgaaatgagttatttgcggggaattgaacaactaactaatgtg
cggatgttgccactaaaacctccaactgatgctgaggctttaactggacaattagaagct
gctaaacaagaaattgcacaacaagctactaataacaagctagataaatttgccccagca
gcacaagaattattggaagaatatgatcctttagtgttagcacaattgttgttaaagaat
ttaagtaaggatcctgaggcgattccagtaaaaattactccagaacgtccgttgccaagt
agacattctcggggcgataatcgttctaatcgcggtcatggtcgcggtggacatcacaat
tatcgttcagatcgtcgtggtggcaacaatcgcaatagcaatcatggtgctagtcgagat
aattcacatggacgtgcaaatcattctactcaacgtcggcgtcgaaattatactgttcga
accaaagattaa
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