Bombilactobacillus bombi: DS830_01660
Help
Entry
DS830_01660 CDS
T06522
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lbm
Bombilactobacillus bombi
Pathway
lbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DS830_01660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbm03019
]
DS830_01660
03400 DNA repair and recombination proteins [BR:
lbm03400
]
DS830_01660
Enzymes [BR:
lbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DS830_01660
Messenger RNA biogenesis [BR:
lbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DS830_01660
DNA repair and recombination proteins [BR:
lbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DS830_01660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXX64250
LinkDB
All DBs
Position
302993..306286
Genome browser
AA seq
1097 aa
AA seq
DB search
MIKDKIEKIIKENGKSIIVLKGFDTSKLPSNNKYFSFNINNYDEVNLKIISNQVVDEIID
KRTFDDDYNWMTIEEYQLFKNQESINKMPIIVLENNLYDKQFPYMQTLSNIENIYQYLYY
QEDNELEPEQKKLLENISFFYGKIDYSKQSGNYYVTYPEIRSDIKSYKYYEDIPVIVDYS
KKSPKENAESIELSDDEIPFLDMEKRLLQDNNSSNIIFTFSGDPQTLPNNYLERLNILKK
LTQAHFFFKTLSIKREVIANEQNYLKILNDVYGYNEFREIYFYKDIENHSKDTIKISQAQ
IIDDIVKQAEQAMDGEAFHDVYITASTGAGKSIMFQIPALYLAQKYKNDKPLTLVISPLI
GLMNDQVNDMKNKGVYTSATINGNTPPFEKEKILEKVQSQEVDVLYLSPETLQARSNIKT
IIGNRNIGVVIVDEAHIVTTWGKSFRADYWYLGIYLAKLRKEYSFPIVTFTATAIYGGKE
DMYLDTRNSLNMISPISYFGKVRRDDILMNVQSSDKYLNVEGRDYRKTKNALALKHLKYA
TKNKQKSLLYFPTVKLLIDFYNFIDLNEPAIAQKTGKYYGTLQKEEKDEVLSKYKTGELQ
FVLATKAFGMGIDIPDITNVYHYAPTGSVVDYIQEIGRAAREKDKIPYGFGMIDFLSKDM
NEVKQLHGMSAIRKSQIIEVMRKVLSIYKEKGNNRNLIISPEDFKYIFVQNKQDENSLDN
KVKTVLLMIEKDFSSPNKLGYSPFVARPRSVFGNDLIFVTSELEEKFIKSRLERYFYKKF
DLTSKTYSAVYQVNLSGIWEKYYKRMSFPSFKFALFNQEERDKLQHKNLFEKFIYASGVE
TILNNNNSIDNILSQYHIILDSFENFVNDKKITGNEFTIIELGNYFMRSLKISDKFEARA
FAQTIVNSAFEFGKIKEMKFISERPNSNVDKPKYKIYQDCDIFTKFIIRTITSILKPTDN
YLQKSDEIFTFYFRSHGDDIDARIAALGIGEARKLLNYQVIGGNNPQIYLRMNSIYPLEK
AIKQGDFYQNSILQDVQNKHYTSVEMLKYLFTKKQSETTPKERILNYSNWFWDVIEDYFM
GILPNKVKYNLSDRIKS
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagataaaattgaaaaaataataaaagagaatggaaagtctattatcgtatta
aagggattcgatacaagcaaacttccatcgaataataaatatttttcttttaatattaat
aattatgacgaagtaaatttaaaaattattagcaatcaagtggtagatgaaatcattgat
aaaagaacttttgatgatgattataactggatgactattgaagaatatcaattgtttaaa
aatcaagaatcaataaataaaatgccaattattgttcttgagaataacttatatgataaa
caatttccatatatgcaaacgctatctaatatagaaaatatttatcaatacttatattat
caagaagataacgaactagagccagagcaaaaaaaattattagaaaatatctcttttttt
tatggtaaaattgattattctaaacaaagtggaaattattatgttacttatccagaaata
agaagtgatataaaatcttataaatattatgaagatataccagttattgtggactattct
aaaaaatctccaaaagaaaatgcagaaagcattgaactctcagatgatgaaattccgttt
ttagatatggaaaagagacttcttcaagataacaatagttcaaatataatttttactttc
tctggagatccacagactttacccaataactatttagaacgtttgaacattctaaaaaaa
ttaacacaagcacattttttctttaaaactctttcaattaaaagagaagttattgcaaat
gaacaaaattatttaaaaattttaaatgatgtgtatggttataatgaatttcgtgaaatt
tatttttataaagatatagaaaaccattctaaagatactattaaaatttcgcaagcacaa
attatcgatgatatagtaaagcaagcagaacaagcaatggatggagaagcatttcatgat
gtttatataactgcatctactggcgctggtaaatctataatgtttcaaatacctgctttg
tatctagcacaaaaatataagaatgataaacccctaactttggtaatctcacctttaata
ggtttaatgaatgatcaagttaatgatatgaaaaataaaggtgtgtatacttcagcaaca
attaatggtaatacacccccttttgaaaaagaaaaaattttagaaaaagtgcaaagccaa
gaagtagatgtattatatttatcaccagaaacattacaagctcgtagtaatattaaaact
attattggtaatagaaatattggcgtagttattgttgatgaagcccatattgttacaaca
tggggaaaatccttcagagctgattattggtatctaggcatatatctggctaaattaaga
aaagagtacagttttccaattgtgacctttacagcaactgcaatttatggtggcaaagaa
gatatgtatttagacacaagaaatagtttgaatatgataagtcctatttcgtattttggt
aaggtcagacgagatgatatattaatgaatgttcaaagtagtgataagtacttaaacgta
gaaggcagagattatagaaaaacaaaaaatgcccttgctttaaagcatctaaagtatgca
acaaagaacaaacaaaagtcattgctttattttccaacagtaaaattgttaattgatttt
tataattttattgatctgaatgaaccagctatagctcaaaaaacaggtaaatactatggt
actttacaaaaagaagaaaaagacgaagtattatcaaaatataaaacaggagaattacaa
tttgttttagcaactaaagcttttggaatgggaattgatattccagatatcactaatgtt
tatcattacgctccaactggaagtgttgtagattatattcaagagattggccgtgctgca
cgtgagaaagataaaattccttatggatttgggatgattgattttctttctaaggatatg
aatgaagttaaacaacttcatggtatgtctgctattagaaaatcacaaattattgaggta
atgagaaaagtattatctatttataaagaaaagggaaataatcgtaatctaattattagt
cctgaagattttaaatatatttttgtacaaaataaacaagatgaaaactcattggataat
aaagttaaaactgtactattaatgatagaaaaagatttttcatcaccaaataagcttgga
tattctccttttgtagctagaccacgaagcgtatttggtaatgatttaatatttgttact
tcagaactagaagaaaagtttattaagtctcgtttggaaagatatttttataaaaagttt
gatttaacaagtaaaacatattcagctgtctatcaagttaatctgagtgggatttgggaa
aagtattataaaagaatgtcatttcctagttttaaatttgcattgtttaatcaagaggaa
cgtgacaaattacaacataaaaatttatttgaaaaatttatatatgcttcaggtgttgaa
actattttaaacaataataattcaatcgataatatattgtcccaataccatattatatta
gattcctttgaaaactttgtaaatgataaaaaaataactggtaatgaatttactattatt
gaattgggaaattactttatgcgttcattaaaaatatctgataaatttgaagctagagca
tttgcacaaacaattgttaattctgcatttgagtttggaaaaattaaagaaatgaaattt
atatctgagcgtcctaatagtaatgttgataaacccaaatataaaatttatcaagattgt
gatatttttactaaatttattattagaacaattacttccattcttaaaccaactgataat
tatcttcaaaaaagtgatgaaatattcaccttttattttagatctcatggagatgatatt
gatgccagaatagccgctttaggtattggagaagctcgaaaattattaaattatcaagtg
attggtggtaataatccacaaatatatttacgaatgaactcaatttatccacttgagaag
gctattaaacaaggtgatttttatcaaaatagtattttacaagatgttcaaaacaaacat
tatactagtgtagagatgttgaagtatctatttacaaaaaaacaatccgagacaactcct
aaagaaagaatattaaattattcaaattggttttgggatgttattgaagattactttatg
ggtatacttcctaataaagttaagtataacctcagtgatagaataaaaagctaa
DBGET
integrated database retrieval system
