Lentilactobacillus buchneri subsp. silagei CD034: LBUCD034_0768
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Entry
LBUCD034_0768 CDS
T02244
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lbn
Lentilactobacillus buchneri subsp. silagei CD034
Pathway
lbn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LBUCD034_0768 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbn03400
]
LBUCD034_0768 (recD)
Enzymes [BR:
lbn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LBUCD034_0768 (recD)
DNA repair and recombination proteins [BR:
lbn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LBUCD034_0768 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
SLFN-g3_helicase
AAA_22
UvrD-helicase
HHH_5
AAA_12
AAA_28
PIF1
nSTAND3
AAA_16
RsgA_GTPase
NTPase_1
AAA
HHH
RecR_HhH
AAA_29
NPHP3_N
T2SSE
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AFR99836
UniProt:
J9W2D1
LinkDB
All DBs
Position
794225..796708
Genome browser
AA seq
827 aa
AA seq
DB search
MDHSIDLFGSEQNNHEPQYVDGRLKAIFFSSNDSFYKVVLVEITETNVNWPEDEIVVTGN
FGDLVEENSYHFTGKLVDHPRYGKQFQASNYTSVIATTREGVVKYLSGDQFPGIGKKTAE
RVVDVLGDDAIEKITADNRVLDDVPISAKLRSAIIENLDADDNLEKTIVGLNSYGFSSAI
ASAIYQKYHEDALKIISDNPYQLVEDIDGISFKKADAIALRLGIVPDSNERIRAGLMYAI
DELCLQNGDTYTTTAPLIQTASSLLEGNAQQQIPGKKLAESLVELAKEGKVVGEEDRIYL
TRLYNAEVQIADHLNRVIKNQDDEDQLKEDAIKKQLRVVEKQFDINYDDSQVAAIVQAIQ
SPAFILTGGPGTGKTTIINGIVNTFARLHEYSLDINSYKDKPFPIVLAAPTGRAAKHMTE
STGLPASTIHRLLGLNGRESNDTTGTKDIEGALLIIDEMSMVDTYLFRSLVRAIPNHMQV
VLVGDQDQLPSVGPGQVFHDLLVSKQIPAMQLNTIYRQEKGSSIIQLAHDIHRGQLSENF
TQNQSDRSFIPCNEYQISSVIEQVTKRAKQKDFGLMDVQVLAPMYRGRAGIDRLNDVVQD
VWQGDPTGKKSVTIREHTYRIGDKVLQLVNNPENNVFNGDIGIIVGMDAPKGQQVPNKIT
IDFDETEVTYEKNEWTQFTLAYCTSIHKAQGSEFKMVILPIVRQFSRMLQRNLLYTAVTR
ASDFLIMLGEKEAFEQCVRNVSVNRQTSLVKRLVDAIGIQPQSKGTDREPEAEDQKQLPT
DTQPAQETDDAKADNLPDHLTTAVINQNLIDPMIGMGDVTPRDFLKS
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
ttggaccattcaatagatttatttggctcagaacagaataatcacgaaccacaatatgtc
gatggccgattaaaggcgatcttcttttcgagtaatgacagtttttataaagtcgtctta
gttgaaattacggagaccaatgtcaattggccggaagacgaaatcgtcgtcaccgggaac
tttggcgatttggttgaagaaaacagctatcatttcaccggaaaactggtcgatcatccc
cgttatggcaagcaatttcaagccagcaactacaccagtgtgatcgccactaccagagaa
ggggtcgtcaagtatttatcaggcgatcagttccccggcattggtaagaagactgccgaa
cgggtggtggatgttcttggcgatgatgcgattgaaaagattaccgcggataaccgtgtt
ttggatgatgttcccattagcgccaaactgcgatcggcaattattgaaaatcttgatgcc
gatgataacttggaaaagaccattgttggactgaacagctatggtttttcgagtgcgatt
gcttcggccatttaccaaaaatatcatgaagatgctttgaaaatcatttctgataatccc
taccaattggttgaagacattgacggcatcagcttcaagaaagccgatgccattgccctt
cgattggggattgtgccggattccaacgaacggattcgggccggattgatgtatgcgatt
gatgaattatgccttcaaaatggggatacatatacgacgacggccccattgattcaaact
gcctcgagccttctggaggggaatgcccagcagcagattcctggaaaaaaattggccgag
agtttggttgagctggctaaagaaggcaaggttgtcggtgaagaagaccgcatttattta
acccggctttacaatgccgaagttcaaattgccgatcatttgaaccgggtaatcaaaaat
caggatgatgaagatcagctcaaagaagatgcgatcaaaaagcaattgcgagtcgttgag
aagcagttcgatattaattatgatgattcccaagttgccgcgattgtccaagcgatccag
tcaccggcatttattttaaccggtggcccgggaaccggaaaaaccaccattatcaacggc
attgtcaacacatttgcccgactacatgagtattcactggatattaattcctataaagac
aaaccgtttccaatcgtgttggccgcaccaaccggtcgagccgccaagcacatgactgaa
tccactgggttgccagccagtaccattcatcgactgcttggtttgaacggccgtgagtcc
aatgacaccactggtaccaaggatattgaaggtgccctattaatcattgatgagatgtcg
atggttgatacttacttgttcaggtcgttagttcgggcaattcccaaccatatgcaggtg
gttttggttggtgaccaggatcaattaccatcagtgggaccaggccaggtattccacgat
ttgctggtttctaagcagattccggccatgcagctgaatacaatttaccgccaggagaag
ggctcatcgattatccaattggctcacgatattcatcgggggcagctgtcggaaaatttc
actcagaaccaatccgaccgctcgtttatcccgtgcaacgaataccagatctcttcggtc
attgaacaggtcactaaacgtgccaagcaaaaagacttcggcttgatggacgtccaggtt
ctggcaccgatgtatcgcggtcgagccggaattgacaggctaaatgacgtggttcaagac
gtttggcagggtgatccaactggtaaaaagtcggttacgatcagagaacacacttatcga
attggcgacaaagtgctccagctggttaataaccctgaaaataacgtcttcaatggcgac
attgggatcattgtggggatggacgcccctaaaggacagcaagtccccaataagattacg
attgattttgatgagaccgaagtgacctatgagaaaaatgagtggacccaattcaccttg
gcttactgcacttcgattcataaagctcagggtagtgaattcaagatggtgattttacca
atcgttcgccagttctcccggatgcttcagcgcaacttactgtatacggccgtgacccgg
gccagcgactttttgattatgctgggtgaaaaagaggcctttgagcaatgtgtccgcaac
gtgtcggttaaccggcagaccagtttggtcaaacggctggtcgacgcaattggcattcag
ccgcaatcaaaaggcacggacagagagccggaagctgaggatcaaaagcaattgccgact
gacacgcaaccagcccaagagactgatgatgctaaggccgataatctgcccgatcattta
accacagcggttatcaatcaaaatctgattgacccgatgattggcatgggggatgtcact
ccccgcgatttcttgaagtcatag
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