Lentilactobacillus buchneri subsp. silagei CD034: LBUCD034_0799
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Entry
LBUCD034_0799 CDS
T02244
Name
(GenBank) metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lbn
Lentilactobacillus buchneri subsp. silagei CD034
Pathway
lbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBUCD034_0799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbn03019
]
LBUCD034_0799
Messenger RNA biogenesis [BR:
lbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBUCD034_0799
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7551
Motif
Other DBs
NCBI-ProteinID:
AFR99867
UniProt:
J9VZW5
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All DBs
Position
827418..829133
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AA seq
571 aa
AA seq
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MKNEIKVMAIGGARENGKNMYAVDINGGIYILDCGLKYPENELLGIDVVIPDFSWLEENK
DRIVGVFLTHGHADSIGAISYFLSKFDVPVFGSEMTIELAKINVSDSEEVKHFDDFHVVS
DRSEIDFEDIKVTFFKTTHSIPGSLGIALHTSDGIIVYTGDFKFDQTAAPIYQTNYSALT
QLGDEGVLALLDDSSNAENPNPSASEKKIAEYVYDTFNYQNSRIIVAGVASNILRMQQVF
NAAARTGRRVYLTGHDLERIVKTAMGLNTLKLPEDDLLIGSLDELKKMAPDKVVIIQTGK
MGEPIKAIQRMANKEQSDINIEPGDLVFITTTPSTAMETTVAKTRDMVYRADGEVKMISD
EMNSSGDASQADLQLLMNLLHPKYIIPVQGEYRLLEANAQLAKEIGYTDDQIVIPAKGDV
ISISEDDIHLGKGVDLADTMIDGIGIGDIGNIVLRDRKVLSEDGIFVAVVTIDRKKKRIV
STPKLTSRGFVYVKANKDLMKDAAGIIEKTVTNNLEHKEFDWSNLKQDVREDLSDYLYKQ
TKRRPVILPVIMEVNQHHKRSKKKQKAAEKN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaaatcaaagtaatggcgattggtggggcccgcgaaaatggcaaaaacatg
tacgcggtcgatatcaatggcggtatttatattttggactgtggtctaaaatacccggaa
aatgaattattgggaattgacgttgtcattcctgattttagctggcttgaagagaataaa
gatcgcattgtcggtgttttcttaacacatggccatgcagattcgattggcgcaatttct
tatttcctgagcaaattcgatgttcccgtctttggatctgaaatgacaattgagcttgct
aaaattaacgtctccgactctgaagaagttaagcacttcgatgactttcacgttgtcagt
gaccgtagtgaaattgattttgaagacattaaggttactttcttcaagacgacacactcg
attcccggttcgctggggattgcgttgcatacatcagatggaatcatcgtttataccggt
gactttaaatttgaccaaacagcggcgccaatctatcaaacaaattattcagcattgacc
cagcttggtgatgagggtgttttggcattgcttgatgattcaagcaatgcggagaaccca
aatcccagtgcctctgaaaagaagatcgctgaatatgtttatgataccttcaattatcaa
aacagccggattattgtcgccggtgtcgcctcaaacattttaagaatgcagcaggtcttc
aatgccgccgccaggaccggtcgcagagtctatttaaccggccatgacctggaacggatt
gttaagactgccatgggattgaatacgctgaaactgccagaggacgatttgttgattggc
tcactggatgagcttaagaaaatggcccctgataaagttgtcatcattcaaaccggcaaa
atgggcgaaccaatcaaagcgattcagcggatggcgaataaagaacaaagtgatattaat
attgaacccggcgacctggtatttatcacgacaaccccgtcaactgccatggaaacaacg
gttgccaagacgcgtgacatggtttaccgtgccgatggcgaagtcaagatgatttctgat
gagatgaattcatcgggggatgccagtcaagctgatttacagttgctgatgaatttatta
catcctaagtatattatcccagtccaaggggaataccgactactggaagccaatgctcaa
ctggccaaagaaatcggctatactgatgatcaaatcgttattcctgccaagggtgatgtg
atctcgatttcagaagatgacattcatttgggcaagggagttgatcttgcggataccatg
atcgacggtatcggcattggcgatatcggcaacattgtccttcgcgatcgaaaggtgctc
tctgaagatggcatttttgtggcagttgtgacgattgaccgcaaaaagaagcggattgtg
tccactcctaaattgacatccagaggatttgtttacgtcaaagccaacaaagacttgatg
aaggatgccgccgggattatcgaaaagacggttaccaacaaccttgaacacaaagagttc
gattggagtaaccttaagcaggacgttcgcgaggatctgagtgattacctgtataaacaa
accaagcggcgaccggttattttaccagttattatggaagttaaccaacatcataaacgt
tcaaagaaaaagcaaaaagcagctgaaaaaaattag
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