Lentilactobacillus buchneri subsp. silagei CD034: LBUCD034_0818
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Entry
LBUCD034_0818 CDS
T02244
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lbn
Lentilactobacillus buchneri subsp. silagei CD034
Pathway
lbn03410
Base excision repair
lbn03430
Mismatch repair
lbn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LBUCD034_0818 (recJ)
03430 Mismatch repair
LBUCD034_0818 (recJ)
03440 Homologous recombination
LBUCD034_0818 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbn03400
]
LBUCD034_0818 (recJ)
DNA repair and recombination proteins [BR:
lbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LBUCD034_0818 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LBUCD034_0818 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LBUCD034_0818 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFR99886
UniProt:
J9W2L1
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All DBs
Position
849423..851753
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AA seq
776 aa
AA seq
DB search
MIDSKYKWQLDQPADSSVVDKLAKDANIDPFMAKTLIQRGITSADAVEDFLNPSVSAFHD
PFLMHDMHKGIERIQQAVENGEHITVYGDYDADGITSTTVMYETLSDLGADVDYYIPNRF
TEGYGPNVEAFQKIIQKGTSLIVTVDNGVAGNQAIVAANELHCDVVVTDHHSLPEKLPDA
YAIIHPRVKNENGDAYPFGDLCGAGVAFKVAQALMDEVPSDLIDITAIGTVADVVSLRDE
NRAIVKFGVQAISNSQRPGLLALIKEAGIDLGRFSEEDIGFGIAPRLNSLGRIKDATVGV
ELLSTFDEDRAGELAKFANQQNDLRKSLVDQFFTEAVQSVEDSGDISQRHTLVVVGHNWH
QGVLGIVASRLVDKYQRPTIVMTDTDGSEEVKGSGRSVDNFDLFKAIDPIRDQTIGFGGH
HSAVGLTIKKDKVPVLKDQLEKAAEEQQLDLSVKPKLAIAGVIPVSQVTAVLCDKIKTLA
PFGQDNPKPIFQVQFDQLANVKAMGKTSDHLKFSLVQGNNRLTAIAFGRGSAAVELQNSQ
AAVQVVGEIGENTWNNRTTLQLMVDDLKQTLPPVIDERTHELHRKMFATVGTYVFFHEKV
LKQLQGYVGGQSQVVMYDQVTEASANGNRLYIVDCPDVLDDLVQLLAKVQPQTTVLYLYK
KQLISKIGMPDRNSYAKLFRFVKEHSNVNIAMQLKQISEHLHISARTIIFMVQVFLELDF
ITIQDRVINLNPNYTARDLKTAPSYHLRVEQLAAEKKLLVSNTHELVSFVKDCLGV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgattgattccaagtataagtggcagcttgatcaaccagctgattcgtcagtagttgac
aagttggccaaggatgcaaatattgacccatttatggctaaaacgttaattcagcgtggc
attaccagtgctgatgctgtcgaggatttcttgaatccttctgtcagtgcctttcatgac
ccatttttgatgcatgacatgcataagggaattgaacgaattcaacaagccgtcgaaaat
ggggagcatattactgtctatggcgattatgacgcggatggcattaccagcacaaccgtt
atgtacgagacattgagtgatctgggtgctgacgttgattattatattcccaaccgattt
actgaaggttacggcccgaacgtcgaagcttttcaaaagattattcaaaagggcacatca
ctgattgtcactgttgataacggggttgccgggaatcaagcgattgtggctgcaaatgag
ttgcattgcgatgtggtggtaaccgatcatcactcgcttcctgaaaagttgcctgatgcg
tatgcgattattcatccgcgggtaaaaaatgaaaatggggatgcttacccatttggcgat
ctttgtggcgctggcgtggcttttaaagttgctcaagcgttgatggacgaagtaccgtct
gatctgattgatattacagcgatcggaacggttgccgatgtcgtatcgttacgtgatgag
aatcgcgcaattgttaaattcggtgttcaggcgatttcaaatagtcaacgtccggggctg
cttgctttgattaaggaagccggcattgatttggggagatttagcgaagaagatattggc
tttgggattgctccccgtttgaattcgcttggtcggatcaaagatgccacagtcggggtc
gaattattatcgacatttgacgaggatcgcgcaggtgaattagccaaatttgccaatcag
caaaacgacttacgcaagtcacttgtcgaccagttcttcactgaagcggttcagtccgtt
gaagatagtggcgacatttctcaacggcacacgctggttgtcgtcggccataactggcac
cagggggttctcggaatcgttgcaagtcgactggttgacaaatatcagcgcccgacaatc
gtcatgaccgacaccgatggtagcgaagaggttaagggatccggccgtagtgtcgacaat
tttgatttatttaaagcaattgaccccattcgcgatcaaacgatcggctttggcggccac
cattctgcagttggattgaccatcaagaaggacaaagtgcctgttttgaaggaccagttg
gaaaaagctgcggaagagcagcaattggatttatctgttaagcccaagttggccattgcc
ggcgttattccggtctctcaggttacagcagtgttatgtgacaaaattaaaactttggca
ccgtttggccaggacaaccctaagcccatttttcaagtccaatttgatcagctcgccaac
gtaaaggcaatgggcaagaccagtgatcacctgaagttttcactggttcaaggcaataat
cggctcactgcgattgcctttggtcgaggaagtgctgccgttgagcttcaaaattctcaa
gcagccgttcaagtggttggcgagattggggaaaacacttggaataatcgaacgacgctc
caattaatggtcgatgatctgaagcagacattaccgccggtgatcgatgagcggactcac
gagctgcaccgaaagatgtttgcgacagtcggcacttacgttttcttccacgaaaaagtc
ttaaaacagctgcaaggatatgtgggtggccaatcgcaagttgtgatgtatgaccaagtc
actgaggcatcggctaatggcaatcgcttgtacattgttgattgtccggacgtgcttgac
gatttggttcagctcttagccaaagtccaaccacaaaccacggtcctatatctttacaaa
aagcaacttatctccaaaatagggatgccagatcggaattcttatgctaaactgtttagg
ttcgttaaagaacattcaaacgttaatattgcgatgcagttaaaacaaatttcagagcac
ttgcacatttctgcacggacaattatttttatggttcaagtctttttggagttggatttc
attacgattcaggatcgggtgattaatttgaatccgaattatactgcccgtgatttgaaa
acagctccaagttaccatcttcgagttgaacagcttgcagctgaaaagaaattgttggtt
tcaaatactcatgaattagtcagcttcgtcaaggactgtttgggtgtttga
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