Lentilactobacillus buchneri subsp. silagei CD034: LBUCD034_1060
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Entry
LBUCD034_1060 CDS
T02244
Symbol
helY
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lbn
Lentilactobacillus buchneri subsp. silagei CD034
Brite
KEGG Orthology (KO) [BR:
lbn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbn03019
]
LBUCD034_1060 (helY)
03009 Ribosome biogenesis [BR:
lbn03009
]
LBUCD034_1060 (helY)
Enzymes [BR:
lbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBUCD034_1060 (helY)
Messenger RNA biogenesis [BR:
lbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBUCD034_1060 (helY)
Ribosome biogenesis [BR:
lbn03009
]
Prokaryotic type
rRNA helicases
LBUCD034_1060 (helY)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Wzy_C_2
Motif
Other DBs
NCBI-ProteinID:
AFS00102
UniProt:
J9W338
LinkDB
All DBs
Position
1053824..1055185
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AA seq
453 aa
AA seq
DB search
MSNFSEFNLKPFLLDAVKELNFSHPTPVQEKVMPVIMQGRDVVGQSATGSGKTHAFLLPI
FNQLDPAKDEVQAVITTPSRELAYQIIDAAKQLAKHSPEPISTGAYIGGTDKARQEKKIQ
HEQPQLVVGTPGRIWDLIQNGGLDVHTASQLVIDEADMTLDMGFLDVVDNIAASFGKHVQ
MMVFSATIPQKINVFLKKYMVNPFIEEIPVSTIISPTIDNWLISTKGQDKNQLIYKLLTI
GEPYLVLIFANTRKRVEELTEYLKGQGLKVAMIHGGLKPRERKQIMKRVKNLEFQFVVAT
DLAARGIDIEGVSDVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEKEVEELE
DMGIHFQPKALKNGEIVDSYDRNRRKTHRKKHDKLDPTMIGMIKKKKKKIKPGYKRRIKN
TIARKDEMDRRVAKREEARAKRKQRKNSSSRYQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatttttcagaatttaatttaaagccattcttattggatgctgttaaggagctg
aacttcagccacccgacacccgtccaggaaaaggtgatgcccgttatcatgcagggaaga
gatgtcgtgggccaatccgctactggtagtggtaagacccatgcttttctgctgccgatt
tttaaccagcttgatcccgcaaaagatgaggttcaagcggtgatcaccacccccagccgg
gaattagcctatcagatcattgatgccgctaagcagttggctaagcactcaccagaacca
atttctaccggtgcctacattggtggaactgacaaggcccgtcaggaaaaaaagattcaa
catgagcagcctcaactggttgtcggcactccgggtcgaatttgggatctgatccaaaac
ggtggactggatgttcacacggcttctcagttagttatcgacgaggcagatatgaccctg
gacatgggattcttggatgtggttgataacattgctgccagtttcgggaaacatgttcag
atgatggttttctcggcaacgatcccacaaaaaatcaacgtctttttgaagaaatatatg
gttaatccttttatcgaagagattccagtgtcgacaattatcagtccgacgatcgataat
tggttgatttcgacgaaggggcaggacaaaaatcaactcatttataaattgctgaccatt
ggggaaccttatttggtcctgatttttgccaatacccgcaaacgagtcgaggagttaacc
gaatatttgaagggccagggattgaaagtcgccatgattcatggcggtctcaagcctcgt
gaacgtaagcaaatcatgaagcgggtcaaaaacctcgaatttcaattcgttgtcgcaact
gatttagctgctcgagggattgatattgaaggggtatcggatgttatcaatgatgatatt
cccaccgaggatttggaattcttcatccatcgtgttggtagaaccggccgaaacgggatg
tccgggacttcgattaccttgtattctcccgatgaggaaaaagaagttgaagaacttgaa
gatatgggcattcatttccaaccgaaagcccttaagaacggcgaaattgtggattcttat
gatcgaaatcgtcgaaagactcatcgaaagaaacacgataagctggatccaacgatgatc
ggcatgatcaagaagaaaaagaagaagatcaagccgggctacaaacggcgaattaaaaat
accattgcccgaaaggacgagatggatcgtcgggttgctaaacgtgaggaagcacgggcc
aaacggaaacaacgtaagaatagttcttcacggtatcaatag
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