Lentilactobacillus buchneri subsp. silagei CD034: LBUCD034_1627
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Entry
LBUCD034_1627 CDS
T02244
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lbn
Lentilactobacillus buchneri subsp. silagei CD034
Pathway
lbn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBUCD034_1627 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbn03400
]
LBUCD034_1627 (mfd)
Enzymes [BR:
lbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBUCD034_1627 (mfd)
DNA repair and recombination proteins [BR:
lbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LBUCD034_1627 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
CdvA
Motif
Other DBs
NCBI-ProteinID:
AFS00643
UniProt:
J9W2B2
LinkDB
All DBs
Position
complement(1608719..1612198)
Genome browser
AA seq
1159 aa
AA seq
DB search
MKPGTRQLVTGVGGSARTLLIDNLIHSTDKPTVVVVDSLFHADQLVNDLSNLIDDDQLFE
FPVEEMGAAELATSSPEYKAQRVLALDKLASGDPAVIVTSVSGIRRLVPEKKQFQAAKLT
LEMDGTYDLEQLKLQLHQMGYVFQKMVAAPGDFSIRGSILDIFPLNHQDPVRIDFFDTDV
DSMRTFDVSNQRSIKNIKSITVLPATDLLMTDDQRKAVSKQLSKRLIAEQSKLDDKAAKK
LQGNLEPQIMDLQNGLSDPRWLLFADMIYKKQSSLLDYLAADGVVIFDDYARITETARQL
ESDDDEWLNDKIKHYEVLKSTTYTNDFKKAFSANHHATLILSLFQKGMGRMRLDAIEDIT
VRPMQQFFSQIPMLRTEILRWQKMKQTVIIMVQDEKRLAKVASTLNDFEITATQTDKDHL
LKQEVQLISSNLDNGFELPLASCVVITEKEMFGTVTKKRPRQTTFNNAERIKSYTDLKPG
DYVVHVNHGIGRYEGMKTMEVDGKHQDYLTISYKDNAKLFIPVTQLNLIQKYVSSEDKHP
RINKLGGSEWAKTKAKVASKIEDIADELIDLYAKRSAEKGYAYPQDDSLQAEFEAAFPYS
ETPDQLRSATEIKRDMETQHPMDRLLVGDVGYGKTEVALRAAFKAIEVGKQVAFLVPTTI
LAQQHYETMLDRFREYPITVRVLSRFQTAKQVKETLQGLKDGKVDVVVGTHRLLSKDVKF
NDLGLLIIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRTLNMSMMGVRDLSVIETPP
SNRYPIQTYVIEQNAGTIREAIEREMSRGGQVFYLHNRVSDIEKTVEQISALVPSARVGY
IHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFVENADRMGLSQLYQLR
GRIGRSSRVAYAYFMYKPNKVLTEIGEKRLEAIRDFTELGSGFKIAMRDLSIRGAGNLLG
KQQHGFVDSVGYDLYTQMLSDAVAKKRGKNFEYRTDATIELDLEAYLPSDYIQDNQQKIE
LYKRIRQIENEDQLHEVEDDLIDRFGDYGEPVANLLKISQLKMFSDYALVDKIHQNQPKI
TITFSPRAGTEFSSKELLEAIAQTKFRATINTENDRYQIQLTVQPNMTKWLDGLIALVKQ
LSKTRHHHGTAGKVKSDEK
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccgggcacgcgtcaattggtgaccggagtcggcggttcggcccggacactttta
atcgataatttaattcattcgactgacaaaccaactgttgtggtagttgactcgttattt
catgctgaccagttggtgaatgacttatctaacttgattgatgacgatcagttgtttgag
ttcccggtggaagaaatgggagcagctgagctggcgaccagttcaccggaatacaaagcc
caacgggtattagcgttggacaagcttgccagcggcgatcccgcagtcattgtgacctct
gtttccggtatcagaagactggtgccggagaaaaagcagtttcaagccgctaagttaacg
cttgaaatggacggcacctatgacctggagcaattaaagcttcaacttcatcaaatgggg
tacgtttttcaaaaaatggttgcggctccgggagacttttcaattcgggggtcgattctc
gatattttcccattaaaccatcaagacccggttcgaattgacttttttgacacggatgtc
gactcaatgcggacattcgatgtttccaatcagcgaagcatcaaaaacatcaagtcaatc
acggtactgccagccacggacttattaatgaccgatgaccagcgaaaagccgtcagcaag
cagctgtccaaacggttaattgctgaacaaagtaaactggatgataaggcggccaaaaaa
cttcagggcaacttggaaccacaaatcatggatctgcaaaatgggttgagtgatccacgc
tggttgttatttgcggatatgatttataaaaaacagtcctccctgttggattacctggct
gccgatggcgttgttattttcgacgattatgccagaattactgaaactgccagacagctt
gagagcgatgacgatgagtggttgaacgacaagattaagcactatgaggttttgaagtct
accacatacaccaacgatttcaagaaagcctttagcgcgaatcatcacgccaccttaatt
ctgtcactgttccaaaaggggatgggccggatgcgactggatgccattgaagacattact
gtacggccgatgcagcagttcttctcccaaattccgatgcttcgaaccgagattttgcgc
tggcagaaaatgaagcagacggtcatcattatggttcaagatgagaaacgactggcaaag
gtcgcttcaacgctgaacgattttgaaattacggcgacacagactgataaggatcatctt
ttaaaacaagaagtccagctcatctccagcaacctggataatggctttgagctgccgttg
gccagttgtgtggtgatcactgaaaaagaaatgtttggcacggtgactaaaaaacgcccc
cgccagaccacctttaacaacgctgaaagaattaagagttataccgatttgaagcctggc
gattatgtcgtccacgtcaaccatggaattggccgttatgaaggcatgaagaccatggaa
gtcgacggtaagcaccaggattatttgacgatttcctataaagataacgccaagttgttc
attccagtcacccagttaaatttaattcaaaaatatgtttcctcagaagataagcacccg
cggatcaacaaactgggcggcagtgagtgggcaaagaccaaggccaaagttgcttccaag
attgaagacatcgctgatgaactaatcgatttatacgccaaaagaagcgcagaaaagggt
tacgcctatccgcaagacgattcgttgcaggcagaattcgaagctgcctttccttacagt
gaaacgcccgatcaactgcggagtgcgacggaaattaagcgggatatggaaacccagcat
ccaatggatcgtttactggttggggatgttggttacggtaagaccgaggttgctttgaga
gctgctttcaaagcaattgaagttggtaaacaggtcgcttttttggtgccaaccacaatt
ttagcccagcagcattatgaaaccatgctggaccgttttcgagagtacccgattacagtc
agagtgctttccagatttcagaccgccaaacaagtcaaggagaccctccaaggcttaaaa
gacggtaaggtcgatgtggttgtcggtactcatcgactgctttcaaaagacgttaagttt
aatgatttgggcctgttaatcattgatgaagagcagcggtttggcgttaaacacaaggaa
cgtatcaaggaaatgcgttctgacgttgatgtcttgacactgacggcaacaccaattcca
cggacgctgaacatgtcgatgatgggggttcgtgatttgtctgtaatcgagacgccgcca
tccaaccgttatcccattcagacttatgtcatcgagcaaaacgccggcacaattcgggag
gcgattgaacgggaaatgtcgcgtggcggccaggtcttttaccttcacaatcgggtttct
gatattgaaaagacagttgaacaaatcagtgccttggttccttccgccagagtcggttac
attcacggacaaatgtccgaaaaccagatggaagacattttgtatgatttcataaatggt
gaatatgatgttttggtaactaccacgattattgaaaccggggtggatattccaaacgtt
aatacgctatttgttgagaatgctgatcgaatgggtctctctcagctttatcaactgcgg
gggcggattggccgcagcagtcgagtggcctatgcttattttatgtacaaaccaaataag
gtcctcacagaaattggtgagaaacggttggaggcaattcgtgactttaccgaattggga
tccggattcaagattgcgatgcgggacctatcaatccgtggagcaggtaacctgcttggt
aagcagcagcacgggtttgttgattcggttgggtacgacctgtatacccagatgctgtcg
gatgctgttgccaaaaaacgcggcaagaactttgagtatcgaactgatgcaactattgag
cttgacctggaagcctatctgccgagtgattatattcaggacaatcaacaaaagattgaa
ttgtataaacggatccgccaaattgaaaatgaagatcagctccacgaagttgaagatgat
ctaatcgatcgatttggggactatggtgaacccgtcgccaacctgttaaagatctctcag
ctgaagatgttctccgattacgcgttggttgataagattcaccaaaatcagcccaaaatt
accatcacattttcacctcgggcagggacagaattctccagcaaggaattgttggaagcg
attgcccaaaccaagttccgggcaaccattaacaccgaaaatgacaggtatcaaattcaa
ttaactgttcagcccaacatgacaaagtggttggacgggctgattgcattagtcaaacaa
ctatcaaaaacccggcatcatcatggtactgccggtaaggtaaagtctgatgaaaaatag
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